RNA id: TCONS_00071765


Basic Information

Item Value
RNA id TCONS_00071765
length 741
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_036758
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49706387 ~ 49728754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTGTGTTAAAGGTAGAAACGCGCTGAGGGAATATTACTGTAAACAGGGCGCCTTTGTTACTTGTTTTCAACACCAGCGAGCTAAAAAAAGTCAATGCTAGCGACATTTTAGGTCTAGGATGGCATCAGCAGTGATCTCCGTGCCCACCACCGCCTCACGCTTCGCCCTGCTGCAGGTCGACTCTGATTCGGACTCAGATTCAGATGTAGGAAAGCCGAAGGCGGCGGGTCGAGGAGCAGGGAAGCCCCGGTCGGGGAAATCGCCTAGCGGGAAGAACAGCCAAAATAACGAGAAAAAGAAGGAAAAGAGGAGACGGAAGAAGGAACAGCAGCAGAGTGAAGCTAATGAGCTCAGGAGTCTTGCTTTTAAGAAGATCCCTCAGAAGTCGACAGCGCCTCCTTCACTCACGCTCCAGGATTTAGCGAATGATCTGATCAATCCGGCAAATGTCCAGCAAGGCTCCAAACCGCAGGAAAACTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGTGACCTGTATGAGGCGGATCTGGAAAAGGCCTTGATGCTAAGTAAATTGGAGTTTGAGGAACATAAAAAGGATGCTGACAAAGCTGAGACGGCGTCACCAAAGACGAAGACTGGTGGAAAGAAGGACAGGAAGAAGAACCAGCAGGGGAAGGACAAACGTGTCACCGTGTCTCTGAAAGACTTCCAGCAGGAGGATCAGCTGAAGAACAAGCCTGAGCGAGAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2485 Predicted to be involved in signal transduction. Predicted to be located in Golgi apparatus. Orthologous to human GKAP1 (G kinase anchoring protein 1).

Ensembl:

ensembl_id ENSDART00000135714

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072530 lncRNA downstream 650816 49043744 ~ 49065039 (-) True XLOC_036745
TCONS_00072088 lncRNA downstream 917823 48795458 ~ 48798032 (-) True XLOC_036743
TCONS_00071726 lncRNA downstream 1047773 48661151 ~ 48668082 (-) False XLOC_036736
TCONS_00072529 lncRNA downstream 1167763 48546053 ~ 48548092 (-) True XLOC_036735
TCONS_00072087 lncRNA downstream 1546519 48168900 ~ 48169336 (-) True XLOC_036734
TCONS_00071776 lncRNA upstream 17642 49746232 ~ 49749612 (-) False XLOC_036760
TCONS_00071777 lncRNA upstream 19821 49748411 ~ 49749381 (-) False XLOC_036760
TCONS_00071778 lncRNA upstream 23676 49752266 ~ 49755968 (-) False XLOC_036760
TCONS_00071779 lncRNA upstream 27674 49756264 ~ 49762657 (-) False XLOC_036760
TCONS_00072531 lncRNA upstream 75398 49803988 ~ 49825917 (-) True XLOC_036761
TCONS_00071763 mRNA downstream 10797 49660829 ~ 49705058 (-) True XLOC_036757
TCONS_00071762 mRNA downstream 13951 49638595 ~ 49701904 (-) False XLOC_036757
TCONS_00071761 mRNA downstream 92527 49617946 ~ 49623328 (-) True XLOC_036756
TCONS_00071760 mRNA downstream 216398 49478026 ~ 49499457 (-) True XLOC_036755
TCONS_00071759 mRNA downstream 220271 49478026 ~ 49495584 (-) False XLOC_036755
TCONS_00071768 mRNA upstream 1573 49730163 ~ 49743513 (-) False XLOC_036759
TCONS_00071769 mRNA upstream 6828 49735418 ~ 49743517 (-) True XLOC_036759
TCONS_00071771 mRNA upstream 16211 49744801 ~ 49764156 (-) False XLOC_036760
TCONS_00071770 mRNA upstream 16211 49744801 ~ 49764156 (-) False XLOC_036760
TCONS_00071772 mRNA upstream 17078 49745668 ~ 49766241 (-) False XLOC_036760
TCONS_00071744 other downstream 543355 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071743 other downstream 563380 49149904 ~ 49152475 (-) True XLOC_036746
TCONS_00071741 other downstream 925268 48778961 ~ 48790587 (-) True XLOC_036742
TCONS_00071727 other downstream 1046728 48667290 ~ 48669127 (-) True XLOC_036736
TCONS_00071722 other downstream 1892537 47810764 ~ 47823318 (-) True XLOC_036731
TCONS_00071775 other upstream 17642 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071797 other upstream 789192 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071804 other upstream 1299249 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071818 other upstream 1705906 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071865 other upstream 3628189 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

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