RNA id: TCONS_00071762


Basic Information

Item Value
RNA id TCONS_00071762
length 1255
RNA type mRNA
GC content 0.51
exon number 13
gene id XLOC_036757
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49638595 ~ 49705058 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTTCTCCCGGTCATAACGACACATCTCTGGCGACATGAGCCACGCGTGACCGACGCTCCGTCCTCTTCAAAACCAAAGGCGAACTCTCGCTTTGCTATGCGGGACCGAGAGCCATGAAAATGCTTCGATTCCGGAGCCCGAGCCTCTCCTCCCTCGCGCTGGAGCTCCAGTGCACCGTCCGGCTGCTCGACGACTCCGAGATCTCCTGCAGCATCCAGAGAGACACTAAAGGGCAGTTTCTGGTGGATCATGTGTGCAATCACTACAGCCTGCTGGAGAAAGATTACTTCGGCATCAGATATGTGGATCCAGACAAACAGAggcattggTTGGACCCGAGCAAACCAGTAGTGAAACAGATGAAATGTCAGCAGCCGTACACCATGTGCTTCAGGGTGAAGTTCTACCCTCAGGAGCCCATCAAGATCAAGGAAGAGCTGACAAGGTATCTTCTGTATCTCCAGTTGAAGAGAGACGTGTATCACGGCAGGCTGTTGTGTCCATTCGCTGATGCTGCATATCTCGGAGCCTGCATCGTCCAGGCTGAGCTTGGAGATTATGACCCCGAAGAGCATCCTGCAGACTACATCAGCGACTTCAAGCTCTTCCCTAAACAATCCCTCAAGCTGGAGCGCAAGATCATGGAGATCCACCAGAACGAGCTGAGaGGTCAGTGTCCTTCCCTCGCAGAGTTAAACCTTCTCCAGAGGGCTCACACACTGGACACGTATGGAGTGGATCCACACCCCTGCAAGGATTTTACAGGATCCACAGCCTTCTTGGGATTCACTGCAAGAGGGTTTGTGGTTTTCCAAGGAAATAAGAGGATCCACCTTTTAAAATgGGCAGATGTCAGCAAATTCAAGTTTGAAGGAAAAACCTTCTATGTGATTGGAAAGAAACTGGTTCTGACCTTCCACACCTCCACACCAGCAGCCTGTAAACACCTGTGGAAATGTGGCGTGGAAAACCAGGCCTTTTACAAATGTGCAAAGTCAAGTCAGATCAAGACTGTGTCCAGCAGCAGTATATTTTTCAAGGGCAGCCGATTCCGCTACAGTGGTCGTGTGGCTAAAGAAGTGATTGAAGCCAGTTCAAAGATTCAGAGGGATCCTCCTGTTGTGCACAGgTGTCAGTTTGGACAAAGCAGAAGCTTTACGTCACTCAGTCATAAACAGCTCATAATGAACATGGAGCCGCTTTTACCAGCTTTAAGCTCCAGCAGGGAAAGCAGAGACTCCTCAGCAGATAACg

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070523-1 Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoskeleton. Orthologous to human FRMD3 (FERM domain containing 3).

Ensembl:

ensembl_id ENSDART00000142115

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072530 lncRNA downstream 573556 49043744 ~ 49065039 (-) True XLOC_036745
TCONS_00072088 lncRNA downstream 840563 48795458 ~ 48798032 (-) True XLOC_036743
TCONS_00071726 lncRNA downstream 970513 48661151 ~ 48668082 (-) False XLOC_036736
TCONS_00072529 lncRNA downstream 1090503 48546053 ~ 48548092 (-) True XLOC_036735
TCONS_00072087 lncRNA downstream 1469259 48168900 ~ 48169336 (-) True XLOC_036734
TCONS_00071776 lncRNA upstream 44328 49746232 ~ 49749612 (-) False XLOC_036760
TCONS_00071777 lncRNA upstream 46507 49748411 ~ 49749381 (-) False XLOC_036760
TCONS_00071778 lncRNA upstream 50362 49752266 ~ 49755968 (-) False XLOC_036760
TCONS_00071779 lncRNA upstream 54360 49756264 ~ 49762657 (-) False XLOC_036760
TCONS_00072531 lncRNA upstream 102084 49803988 ~ 49825917 (-) True XLOC_036761
TCONS_00071761 mRNA downstream 15267 49617946 ~ 49623328 (-) True XLOC_036756
TCONS_00071760 mRNA downstream 139138 49478026 ~ 49499457 (-) True XLOC_036755
TCONS_00071759 mRNA downstream 143011 49478026 ~ 49495584 (-) False XLOC_036755
TCONS_00071756 mRNA downstream 206534 49403668 ~ 49432061 (-) False XLOC_036754
TCONS_00071764 mRNA upstream 4483 49706387 ~ 49728754 (-) False XLOC_036758
TCONS_00071765 mRNA upstream 13951 49715855 ~ 49728590 (-) False XLOC_036758
TCONS_00071766 mRNA upstream 18248 49720152 ~ 49725430 (-) False XLOC_036758
TCONS_00071767 mRNA upstream 23191 49725095 ~ 49728718 (-) True XLOC_036758
TCONS_00071768 mRNA upstream 28259 49730163 ~ 49743513 (-) False XLOC_036759
TCONS_00071744 other downstream 466095 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071743 other downstream 486120 49149904 ~ 49152475 (-) True XLOC_036746
TCONS_00071741 other downstream 848008 48778961 ~ 48790587 (-) True XLOC_036742
TCONS_00071727 other downstream 969468 48667290 ~ 48669127 (-) True XLOC_036736
TCONS_00071722 other downstream 1815277 47810764 ~ 47823318 (-) True XLOC_036731
TCONS_00071775 other upstream 44328 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071797 other upstream 815878 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071804 other upstream 1325935 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071818 other upstream 1732592 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071865 other upstream 3654875 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_05069414_05117314.mRNA True 1695 mRNA 0.51 13 CI01000050 5069414 ~ 5117314 (+)