RNA id: TCONS_00071777


Basic Information

Item Value
RNA id TCONS_00071777
length 891
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_036760
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49744801 ~ 49766241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTTTTGGCATTGAGAAGACAAAAGAGTGGCCCAATTGACCCAAATCCAGTAAACATTATTAACTTCTTCCCCTTAAATCAGATAGTAATTCGTCTTGGGATTCCTCCTATCAGTCTGGTGAGTGTTTCATCCTGTTGGGCCAGCTGTTTTGTCGTGTCCAGTTGTAAACCTCTCATTTTAACACGTTTTTACTGTCTCCATGTGCTCAGGTGGAAGGAGCAGTTACAGTGACGGTCCTGTGATCACCACACAAGTGACTATTCCTAAAGATCTGGCGGGATCCATCATTGGTAAAGGAGGACAGAGGATCAAGCAGATTCGCCACGAGTCTGGAGCGTCAATCAAAATCGACGAGCCCCTCCAGGGTTCAGAGGATCGCATCATCACCATCACAGGAACCCAAGACCAGATCCAGAACGCTCAGTACCTGTTACAGAACAGGTATGATCTTCATTCAGTTCATTTCACCAGAGAGCaaagaatcaccaagaggcgatactctagtgcgatttggggaaaCGGCCACTAGATGGCGTTGCGGCTATTTTGAAGTGAACATTTCAATAGAACAACAGagtattataagtctgtaaaataagctATTAAAAGTGCAGATGATTGTGATGGTAAGTGTTgaattgtcgtctttcaggttgctttaatgctctttttaaataaatgaataacaaagcagctgctttccatcccGACAGCAAAATGATTCAATAGACAGCCGACTGCTTTCACTCCAAAACGGCGGAATCGGAGGCTGTTGAAGGGCTCTGCTGTTGCAATTGAATGTTCTGTTCCAACATGATAAATgtcaatcaaaggcggcaacaccaaggctccaaaagtacaaatttattcaattaaaaaggctgacac

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006396 RNA processing biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko05206 MicroRNAs in cancer
ko05203 Viral carcinogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-1926 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleoplasm and viral nucleocapsid. Predicted to be part of spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; gut; otic vesicle; pectoral fin; and ventral mesoderm. Orthologous to human HNRNPK (heterogeneous nuclear ribonucleoprotein K).

Ensembl:

ensembl_id ENSDART00000135841

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072530 lncRNA downstream 683372 49043744 ~ 49065039 (-) True XLOC_036745
TCONS_00072088 lncRNA downstream 950379 48795458 ~ 48798032 (-) True XLOC_036743
TCONS_00071726 lncRNA downstream 1080329 48661151 ~ 48668082 (-) False XLOC_036736
TCONS_00072529 lncRNA downstream 1200319 48546053 ~ 48548092 (-) True XLOC_036735
TCONS_00072087 lncRNA downstream 1579075 48168900 ~ 48169336 (-) True XLOC_036734
TCONS_00071778 lncRNA upstream 2885 49752266 ~ 49755968 (-) False XLOC_036760
TCONS_00071779 lncRNA upstream 6883 49756264 ~ 49762657 (-) False XLOC_036760
TCONS_00072531 lncRNA upstream 54607 49803988 ~ 49825917 (-) True XLOC_036761
TCONS_00072532 lncRNA upstream 114697 49864078 ~ 49870677 (-) False XLOC_036762
TCONS_00072536 lncRNA upstream 114697 49864078 ~ 49871582 (-) False XLOC_036762
TCONS_00071769 mRNA downstream 4894 49735418 ~ 49743517 (-) True XLOC_036759
TCONS_00071768 mRNA downstream 4898 49730163 ~ 49743513 (-) False XLOC_036759
TCONS_00071767 mRNA downstream 19693 49725095 ~ 49728718 (-) True XLOC_036758
TCONS_00071765 mRNA downstream 19821 49715855 ~ 49728590 (-) False XLOC_036758
TCONS_00071780 mRNA upstream 6883 49756264 ~ 49766205 (-) True XLOC_036760
TCONS_00071781 mRNA upstream 136257 49885638 ~ 49908978 (-) False XLOC_036763
TCONS_00071782 mRNA upstream 136261 49885642 ~ 49935358 (-) False XLOC_036763
TCONS_00071783 mRNA upstream 179154 49928535 ~ 49935358 (-) True XLOC_036763
TCONS_00071784 mRNA upstream 317421 50066802 ~ 50133064 (-) False XLOC_036764
TCONS_00071744 other downstream 575911 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071743 other downstream 595936 49149904 ~ 49152475 (-) True XLOC_036746
TCONS_00071741 other downstream 957824 48778961 ~ 48790587 (-) True XLOC_036742
TCONS_00071727 other downstream 1079284 48667290 ~ 48669127 (-) True XLOC_036736
TCONS_00071722 other downstream 1925093 47810764 ~ 47823318 (-) True XLOC_036731
TCONS_00071797 other upstream 768401 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071804 other upstream 1278458 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071818 other upstream 1685115 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071865 other upstream 3607398 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

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