G1760858


Basic Information

Item Value
gene id G1760858
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63375169 ~ 63419796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2016838
CAACGGCGTTGCTTCAAGTTGTTAGCTATAAACTTTCCAGTCCCCAGAAGACAAGGTTCAGGAAAAAAACGTGTATTTTGTTTGCGCTGCaaaatgtttgaaaatatggTTGTGAGACAGAGAAAAGTGTTCAAACTGCCGACCAACACAGAGAAGTATCGTGAAGCACATCCCAACGACGGTTACATCGGCGAGGATCACGACGAAACGGACGAGTTTAGGAAGATGGTGGACAGTTACAGCGAAACTGGGAGACAGAAGctatctTCCAGATAATCCAAAGTGTCAGACAGGGGTTGTGATGGCCAAAGATCAGCACCTTCTCCTCGTGGGAAACACCAACACCGTCACCCCGTCCCTGATACACAGGTCTCAGACGCATCCTCCTCTCTATGTCAAGTTAAACATCAGTTGATTCTACATACTGTGAATTaatctcttgtcctctctctctcttttggtgTCAAACTATGTATTTTGTTAATATTGATTGGTCTGTATTGGTAATGTTGAAATATGAAATGTGTTTTCCATCTAGTTATTGAAATAACCATTTTGTTTATGGAAAGTTAATGCCTGTTCTCCTGTCTCATCTGATCTGTACTCTGTTAGTAAcactgatcccaggtcagtttggTATTGGTCCCACTGTTGGCTGCTGTTGGGACGTGGGGagagaaccactgctctaggtTCAGTCTCATCGTGTTAGTCCACTCTTTCTCTTCATGTCTCtttcaattaaaaaataaataaattcagtTTGCTTTATTGGCACAACGTAAGAATGTaatgtctctctccccgtctctcacAACGTAagaatgtacac

Function

NR:

description
PREDICTED: uncharacterized protein LOC105904554 isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2016838 True 832 lncRNA 0.42 2 63375169 63419796

Neighbor

gene id symbol gene type direction distance location
si:ch73-265d7.2 NA coding upstream 2956 63363590 ~ 63372213 (+)
LOC110500814 LOC100194636 coding upstream 31555 63329511 ~ 63343614 (+)
pfn1 prof1 coding upstream 57648 63307806 ~ 63317521 (+)
LOC118942976 NA coding upstream 136862 63232777 ~ 63238307 (+)
LOC110500912 LOC105006398 coding upstream 152070 63162215 ~ 63223099 (+)
LOC118942978 NA coding downstream 111939 63528908 ~ 63534562 (+)
LOC110503296 LOC106592207 coding downstream 188875 63608671 ~ 63655491 (+)
zgc:158659 pik3ca coding downstream 244227 63664023 ~ 63813757 (+)
ctc1 LOC106595900 coding downstream 412759 63832555 ~ 63879982 (+)
tfr2 LOC106592655 coding downstream 473398 63893194 ~ 64066184 (+)
G1760852 NA non-coding upstream 19639 63347266 ~ 63355530 (+)
G1760851 NA non-coding upstream 27162 63344035 ~ 63348007 (+)
G1760848 NA non-coding upstream 34867 63339896 ~ 63340302 (+)
G1760824 NA non-coding upstream 39498 63281396 ~ 63335671 (+)
G1760841 NA non-coding upstream 50064 63323857 ~ 63325105 (+)
G1760873 NA non-coding downstream 10558 63430354 ~ 63430710 (+)
G1760859 camta2 non-coding downstream 15381 63435177 ~ 63449067 (+)
G1760876 NA non-coding downstream 16018 63435814 ~ 63438049 (+)
G1760879 NA non-coding downstream 35349 63455145 ~ 63455799 (+)
G1760867 camta2 non-coding downstream 38590 63458386 ~ 63458607 (+)
G1760800 NA other upstream 159416 63210133 ~ 63215753 (+)
LOC110500813 tsc22d4 other upstream 346729 62991115 ~ 63050683 (+)
LOC110500953 LOC106594432 other upstream 486131 62873681 ~ 62903536 (+)
G1760587 NA other upstream 560928 62811775 ~ 62814241 (+)
G1760941 NA other downstream 130109 63549905 ~ 63551492 (+)
G1761231 NA other downstream 997641 64417437 ~ 64418064 (+)
LOC110500801 LOC106608413 other downstream 1314912 64734656 ~ 64754522 (+)
LOC118942983 NA other downstream 1334833 64754608 ~ 64760958 (+)

Expression


Co-expression Network