G1760859 (camta2)


Basic Information

Item Value
gene id G1760859
gene name camta2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63435177 ~ 63449067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2016840
gagagagagagagagagagagagagagagaagagagaaaaaacatTCAGTAACATTAAAAAGTGACTAGATTCTGATTTCTCTCTGATATCACTCATATCACTGTGACATCGCTGTGAGGTCACTGACCGGTGTCGGCATCGTCGTAGGAATCTCATGATCTTCCTAGCGGCCTGGTCCTGCTTCTTAGTCAGGAAGGAACCCCTGAAGGTATTCAGTTTTGGATTGTGTGATCCGGACCCTCTGGGTCCCTGTTTGAGGCGTTCATACTCCTTATAGCTGCGGTAGTACTGTTGGATCAGAACCGCAGCCCGTCTAGACTGCTGGAATTTCTTCTGCTCATAGTAACTACGGAACTTAGACTGGATCAGTATCGCTGCCTGAGTCATCCTTTTATACAGAGCatactgacagaggagaggagaggagaggagaggagaggagagggagcgagcgagagagagagagagaggaagggagggagggagggagggagggagggagggagggagggagggagagagaaagagagaaagagggagatagagggacagggggtagagaggagagggagagaggagaggagagggaaggagggaggagagggggaggggaggagagggttgaagaaaaggggagggagagttaCACATCTTCTTGAACACATATAAACATACATTTAAGGACACAGCACACactcctctttcactccagcCTAAAGCACATACCCACACAGGTTCCACACGCCAAATGCAGAGACACAATCTACACAAAGCCTTTAGTGAATGACAGTAGAGACAATCAGAGGTTAGACACGTTACCTTCAGAGCTATCCATGTTAGCTAGCATGAtaatatcagagagagagagagagatggagggatggagagagggaaggaggcgtggagaaagagagatacggTAGATGAGAGGACAAAGAGAGTGGACTATTAGTGTTGTTGACACACACAGCATGTCACAAGCAGCAGGACAGCGACAGcgactctgcctcctctccagtCAGAGGACAGGGGTTAGAGATCAGGGAAACCTCTGGGGTTTGGAGGTAAAGAAGTGTGTGCTGGGTAAAGGGGCGTGTCTCTACCTGCTTGTACTTCCTGTAGCATCGTTGGATGACGGCTGCTGCCATGTCCTGCTGTTCCTTCAACCTCCGACCCTGGACAGAGAGAATAAGATCAGCatttaggagggagggagagagaatatgaTCAGCTTCA

Function

symbol description
camta2 Predicted to enable DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Orthologous to human CAMTA2 (calmodulin binding transcription activator 2).

NR:

description
PREDICTED: calmodulin-binding transcription activator 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2016840 True 1237 lncRNA 0.50 2 63435177 63449067

Neighbor

gene id symbol gene type direction distance location
si:ch73-265d7.2 NA coding upstream 62964 63363590 ~ 63372213 (+)
LOC110500814 LOC100194636 coding upstream 91563 63329511 ~ 63343614 (+)
pfn1 prof1 coding upstream 117656 63307806 ~ 63317521 (+)
LOC118942976 NA coding upstream 196870 63232777 ~ 63238307 (+)
LOC110500912 LOC105006398 coding upstream 212078 63162215 ~ 63223099 (+)
LOC118942978 NA coding downstream 82668 63528908 ~ 63534562 (+)
LOC110503296 LOC106592207 coding downstream 159604 63608671 ~ 63655491 (+)
zgc:158659 pik3ca coding downstream 214956 63664023 ~ 63813757 (+)
ctc1 LOC106595900 coding downstream 383488 63832555 ~ 63879982 (+)
tfr2 LOC106592655 coding downstream 444127 63893194 ~ 64066184 (+)
G1760873 NA non-coding upstream 4467 63430354 ~ 63430710 (+)
G1760858 NA non-coding upstream 15381 63375169 ~ 63419796 (+)
G1760865 NA non-coding upstream 18371 63396272 ~ 63418259 (+)
G1760852 NA non-coding upstream 79647 63347266 ~ 63355530 (+)
G1760851 NA non-coding upstream 87170 63344035 ~ 63348007 (+)
G1760879 NA non-coding downstream 6078 63455145 ~ 63455799 (+)
G1760867 camta2 non-coding downstream 9319 63458386 ~ 63458607 (+)
G1760880 NA non-coding downstream 10510 63459577 ~ 63460210 (+)
G1760881 NA non-coding downstream 12116 63461183 ~ 63461562 (+)
G1760886 NA non-coding downstream 14428 63463495 ~ 63463949 (+)
G1760800 NA other upstream 219424 63210133 ~ 63215753 (+)
LOC110500813 tsc22d4 other upstream 406737 62991115 ~ 63050683 (+)
LOC110500953 LOC106594432 other upstream 546139 62873681 ~ 62903536 (+)
G1760941 NA other downstream 100838 63549905 ~ 63551492 (+)
G1761231 NA other downstream 968370 64417437 ~ 64418064 (+)
LOC110500801 LOC106608413 other downstream 1285641 64734656 ~ 64754522 (+)
LOC118942983 NA other downstream 1305562 64754608 ~ 64760958 (+)

Expression


Co-expression Network