G1811299 (LOC106582422)


Basic Information

Item Value
gene id G1811299
gene name LOC106582422
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41812032 ~ 41813258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2072224
TGAGACTATGAGGCCAGTCCTACCCACAAACAGCTGGCTGTTGAGCCTGAGACTATGAGGCCAGTCCTACCCACAAACAGCTGGCTGTTGAGCCGGAGGCGGAGGTGTCCCTCAGATGGAGCTTCCAGGAAGCGCAGGGGCAGCTGGTCCACCTGCAGCGAGGCCTCCTTCACGCTGCGCTCCGCCCTCACATAGTGCCACTGCCTATCATTCAGGGGCACGTGGGACTTAATGGCCAGGACCACCGGCCCGTTTCCCACATCAAAGGAGAACGTCACTGCAAACGGAGCTGGGGGAAAGCTGAGCTCCACTCTGATGAAGTCCTTGAGGCCCACGTTCTCCAGGAAGACTCCTGAGGGAGCGCTGGTCTTGAAGTAGAAGGAGATATCAGCGCTGAGCTCTGCCTGGAGGGTGGGGAAGTGCAGGTAGG

Function

NR:

description
contactin-associated protein-like 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2072224 True 430 lncRNA 0.60 2 41812032 41813258

Neighbor

gene id symbol gene type direction distance location
LOC110502150 NA coding upstream 283896 41526982 ~ 41528136 (+)
LOC110501885 LOC106582417 coding upstream 448906 41286486 ~ 41363126 (+)
LOC110501877 LOC106582405 coding upstream 1053806 40745882 ~ 40758226 (+)
LOC110501874 LOC106582403 coding upstream 1253283 40550073 ~ 40558749 (+)
nmi LOC106582386 coding upstream 1311374 40494866 ~ 40500658 (+)
LOC110502132 clm8 coding downstream 127939 41941197 ~ 41943225 (+)
LOC110501889 LOC106582433 coding downstream 443159 42256417 ~ 42389468 (+)
LOC110501894 glpc coding downstream 698715 42511973 ~ 42550970 (+)
LOC110502156 ahr2a coding downstream 801920 42615178 ~ 42685108 (+)
LOC110502157 LOC106582435 coding downstream 874957 42688215 ~ 42735867 (+)
G1811239 NA non-coding upstream 47055 41764739 ~ 41764977 (+)
G1811238 NA non-coding upstream 47626 41764114 ~ 41764406 (+)
G1811121 NA non-coding upstream 76967 41734646 ~ 41735065 (+)
G1811049 NA non-coding upstream 141154 41668949 ~ 41670878 (+)
G1811067 NA non-coding upstream 159478 41652346 ~ 41652554 (+)
G1811301 NA non-coding downstream 3779 41817037 ~ 41817346 (+)
G1811303 NA non-coding downstream 5941 41819199 ~ 41819403 (+)
G1811331 NA non-coding downstream 50453 41863711 ~ 41864574 (+)
G1811516 NA non-coding downstream 154048 41967306 ~ 41970274 (+)
G1811532 NA non-coding downstream 176770 41990028 ~ 41990631 (+)
G1810740 NA other upstream 345683 41464478 ~ 41466349 (+)
G1810553 NA other upstream 619540 41189689 ~ 41192492 (+)
G1809107 NA other upstream 1886637 39924414 ~ 39925395 (+)
G1808787 NA other upstream 2117164 39693913 ~ 39694868 (+)
G1808209 NA other upstream 2660699 39149080 ~ 39151333 (+)
G1812428 NA other downstream 910414 42723672 ~ 42724114 (+)
G1812953 NA other downstream 1336504 43149762 ~ 43150384 (+)
G1813442 NA other downstream 2294986 44108244 ~ 44110867 (+)

Expression


Co-expression Network