G1811049


Basic Information

Item Value
gene id G1811049
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41668949 ~ 41670878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2071960
AAAAGTATGCAGCCACAAAACAGATGTGAAATGTGTATTAACAACACAAACAGGGGAGAAAACATACCCAGAATCTTTAACAGAGTTTTAGCATTGTAACAGTGGTTGGATATTGAATGAGGCATATATGTAGTTATATGTAGAGTCATATTAACTGGTGACCAGCTTCGGTACAACATATTCACTAAGTCTAGTATATAAATAACTGCAGGCCATATGGTTTCCTTTTAAAAGATAGTTAAGAGAGGTGAAAAAGCGGTGAGAGatgaatttattttaaatgaAAGAACAAAGTTAATCTGTGAGTTATGCACAGTTATTCACTCGGCCCTTAGAAATATGTTCACTAACAAAGTAGTTGAATTAAAACGGACCACAGTAGGAGGAAACAATAAGAGAGCGCTTTCTTCTGAACAACTCCGACGCTTTATAAATAAACACATTATATTTAGCTCGTTTGACACACGTGACAAGGCTAGAGAACAAGGATACCATTTAGAAACGTTGTCTTTGCACTGGATCGAGTCCACAGTTATGAACGAAAGGTGTCAAAGTGTCTTTAAAAAATGCTGTGCCATATTTagagtaaaaaaaatacatactaTGCCAGACAATGAAGATTAAAATAGTCTTTGTGAATACTGAGACTGTAGCATTGTGTAGTTTGGCTGGTGGCTATACAAAGATGGGTGGTTGAGGACTAGCAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTGGAGGTGAGGGGGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAATCCTTCTGGAGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCAAGGGGTGAGGGGGAGTCTAGTCCTTCTAGGAGTGAGGGGGGACAGTCTAGCAGTCTAATCCTCCTGGGAGTAGTCTAGCAGTCCAGCCCCTCACCCCCATAAGGACTAAAGGCAGATTCAGAGGAAGCAAGACTCAGagggaccagacagacagctgttgtTCAGAATCTTCAATACAAACAGGGAATAAGGTTGCGGAGCATAGGAAGATATGCAAAAATGATCACAGGGGTGATCCACAGGGGTGGGGTTGGGTCAAGGGTGGGGATGGGATGGTGATGGACATAGGAAGGACAGCAGGAGGCGGAGTCTGTATCAACAGTCCAAAGGTTCATCCTCTTCTATCATCTATACGGGTGGGAAATAAATTGCTTTCCAATTAGCGGAGATATAAGGGAAGGAGACAAGCTGCACCCTATGAGTGATGATGACAATGATTATGGTCAGTTTGGTCTATATGGCACAGTCGTCCTGAGAGGCGGGGCTGAAGGCTGAGCTCCGGAGCGTATCCAGGCAGTTGACGAGGATGAGCGTTCCCGTCAGGTGTTTCCAACGCTTGGTGATGGGGCTCTTCATCTTGTCCAGGCCCATGTGGAGCTCCTGGATCACGTCCCGGTAGCTGTCCCCAATCTGGGCAGCCCACGT
>TU2071962
AAAAGTATGCAGCCACAAAACAGATGTGAAATGTGTATTAACAACACAAACAGGGGAGAAAACATACCCAGAATCTTTAACAGAGTTTTAGCATTGTAACAGTGGTTGGATATTGAATGAGGCATATATGTAGTTATATGTAGAGTCATATTAACTGGTGACCAGCTTCGGTACAACATATTCACTAAGTCTAGTATATAAATAACTGCAGGCCATATGGTTTCCTTTTAAAAGATAGTTAAGAGAGGTGAAAAAGCGGTGAGAGatgaatttattttaaatgaAAGAACAAAGTTAATCTGTGAGTTATGCACAGTTATTCACTCGGCCCTTAGAAATATGTTCACTAACAAAGTAGTTGAATTAAAACGGACCACAGTAGGAGGAAACAATAAGAGAGCGCTTTCTTCTGAACAACTCCGACGCTTTATAAATAAACACATTATATTTAGCTCGTTTGACACACGTGACAAGGCTAGAGAACAAGGATACCATTTAGAAACGTTGTCTTTGCACTGGATCGAGTCCACAGTTATGAACGAAAGGTGTCAAAGTGTCTTTAAAAAATGCTGTGCCATATTTagagtaaaaaaaatacatactaTGCCAGACAATGAAGATTAAAATAGTCTTTGTGAATACTGAGACTGTAGCATTGTGTAGTTTGGCTGGTGGCTATACAAAGATGGGTGGTTGAGGACTAGCAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCAAGGGGTGAGGGGGAGTCTAGTCCTTCTAGGAGTGAGGGGGGACAGTCTAGCAGTCTAATCCTCCTGGGAGTAGTCTAGCAGTCCAGCCCCTCACCCCCATAAGGACTAAAGGCAGATTCAGAGGAAGCAAGACTCAGagggaccagacagacagctgttgtTCAGAATCTTCAATACAAACAGGGAATAAGGTTGCGGAGCATAGGAAGATATGCAAAAATGATCACAGGGGTGATCCACAGGGGTGGGGTTGGGTCAAGGGTGGGGATGGGATGGTGATGGACATAGGAAGGACAGCAGGAGGCGGAGTCTGTATCAACAGTCCAAAGGTTCATCCTCTTCTATCATCTATACGGGTGGGAAATAAATTGCTTTCCAATTAGCGGAGATATAAGGGAAGGAGACAAGCTGCACCCTATGAGTGATGATGACAATGATTATGGTCAGTTTGGTCTATATGGCACAGTCGTCCTGAGAGGCGGGGCTGAAGGCTGAGCTCCGGAGCGTATCCAGGCAGTTGACGAGGATGAGCGTTCCCGTCAGGTGTTTCCAACGCTTGGTGATGGGGCTCTTCATCTTGTCCAGGCCCATGTGGAGCTCCTGGATCACGTCCCGGTAGCTGTCCCCAATCTGGGCAGCCCACGT
>TU2071963
AAAAGTATGCAGCCACAAAACAGATGTGAAATGTGTATTAACAACACAAACAGGGGAGAAAACATACCCAGAATCTTTAACAGAGTTTTAGCATTGTAACAGTGGTTGGATATTGAATGAGGCATATATGTAGTTATATGTAGAGTCATATTAACTGGTGACCAGCTTCGGTACAACATATTCACTAAGTCTAGTATATAAATAACTGCAGGCCATATGGTTTCCTTTTAAAAGATAGTTAAGAGAGGTGAAAAAGCGGTGAGAGatgaatttattttaaatgaAAGAACAAAGTTAATCTGTGAGTTATGCACAGTTATTCACTCGGCCCTTAGAAATATGTTCACTAACAAAGTAGTTGAATTAAAACGGACCACAGTAGGAGGAAACAATAAGAGAGCGCTTTCTTCTGAACAACTCCGACGCTTTATAAATAAACACATTATATTTAGCTCGTTTGACACACGTGACAAGGCTAGAGAACAAGGATACCATTTAGAAACGTTGTCTTTGCACTGGATCGAGTCCACAGTTATGAACGAAAGGTGTCAAAGTGTCTTTAAAAAATGCTGTGCCATATTTagagtaaaaaaaatacatactaTGCCAGACAATGAAGATTAAAATAGTCTTTGTGAATACTGAGACTGTAGCATTGTGTAGTTTGGCTGGTGGCTATACAAAGATGGGTGGTTGAGGACTAGCAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTGGAGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCTAGGGGTGAGGGGGAGTCTAGTCCTCCAAGGGGTGAGGGGGAGTCTAGTCCTTCTAGGAGTGAGGGGGGACAGTCTAGCAGTCTAATCCTCCTGGGAGTAGTCTAGCAGTCCAGCCCCTCACCCCCATAAGGACTAAAGGCAGATTCAGAGGAAGCAAGACTCAGagggaccagacagacagctgttgtTCAGAATCTTCAATACAAACAGGGAATAAGGTTGCGGAGCATAGGAAGATATGCAAAAATGATCACAGGGGTGATCCACAGGGGTGGGGTTGGGTCAAGGGTGGGGATGGGATGGTGATGGACATAGGAAGGACAGCAGGAGGCGGAGTCTGTATCAACAGTCCAAAGGTTCATCCTCTTCTATCATCTATACGGGTGGGAAATAAATTGCTTTCCAATTAGCGGAGATATAAGGGAAGGAGACAAGCTGCACCCTATGAGTGATGATGACAATGATTATGGTCAGTTTGGTCTATATGGCACAGTCGTCCTGAGAGGCGGGGCTGAAGGCTGAGCTCCGGAGCGTATCCAGGCAGTTGACGAGGATGAGCGTTCCCGTCAGGTGTTTCCAACGCTTGGTGATGGGGCTCTTCATCTTGTCCAGGCCCATGTGGAGCTCCTGGATCACGTCCCGGTAGCTGTCCCCAATCTGGGCAGCCCACGT

Function

NR:

description
PREDICTED: SH3 domain-binding protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2071960 False 1605 lncRNA 0.47 2 41668949 41670878
TU2071962 False 1526 lncRNA 0.46 2 41668949 41670878
TU2071963 True 1553 lncRNA 0.46 2 41668949 41670878

Neighbor

gene id symbol gene type direction distance location
LOC110502150 NA coding upstream 140813 41526982 ~ 41528136 (+)
LOC110501885 LOC106582417 coding upstream 305823 41286486 ~ 41363126 (+)
LOC110501877 LOC106582405 coding upstream 910723 40745882 ~ 40758226 (+)
LOC110501874 LOC106582403 coding upstream 1110200 40550073 ~ 40558749 (+)
nmi LOC106582386 coding upstream 1168291 40494866 ~ 40500658 (+)
LOC110502132 clm8 coding downstream 270319 41941197 ~ 41943225 (+)
LOC110501889 LOC106582433 coding downstream 585539 42256417 ~ 42389468 (+)
LOC110501894 glpc coding downstream 841095 42511973 ~ 42550970 (+)
LOC110502156 ahr2a coding downstream 944300 42615178 ~ 42685108 (+)
LOC110502157 LOC106582435 coding downstream 1017337 42688215 ~ 42735867 (+)
G1811067 NA non-coding upstream 16395 41652346 ~ 41652554 (+)
G1811056 NA non-coding upstream 42699 41625304 ~ 41626250 (+)
G1811047 LOC106582419 non-coding upstream 44168 41612555 ~ 41624781 (+)
G1811037 NA non-coding upstream 67278 41601459 ~ 41601671 (+)
G1811018 NA non-coding upstream 86006 41582640 ~ 41582943 (+)
G1811121 NA non-coding downstream 63768 41734646 ~ 41735065 (+)
G1811238 NA non-coding downstream 93236 41764114 ~ 41764406 (+)
G1811239 NA non-coding downstream 93861 41764739 ~ 41764977 (+)
G1811299 LOC106582422 non-coding downstream 141154 41812032 ~ 41813258 (+)
G1811301 NA non-coding downstream 146159 41817037 ~ 41817346 (+)
G1810740 NA other upstream 202600 41464478 ~ 41466349 (+)
G1810553 NA other upstream 476457 41189689 ~ 41192492 (+)
G1809107 NA other upstream 1743554 39924414 ~ 39925395 (+)
G1808787 NA other upstream 1974081 39693913 ~ 39694868 (+)
G1808209 NA other upstream 2517616 39149080 ~ 39151333 (+)
G1812428 NA other downstream 1052794 42723672 ~ 42724114 (+)
G1812953 NA other downstream 1478884 43149762 ~ 43150384 (+)
G1813442 NA other downstream 2437366 44108244 ~ 44110867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G128471 NA non-coding NC_053123.1 CM020920.1 31807177 ~ 31812527 (-)