G1983474


Basic Information

Item Value
gene id G1983474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41365266 ~ 41365493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2267619
GTACTTAAGACCTTGTTTGAGAGCTTGTTAGATCTCTGTAGTGACGAGAAGTTAACTCTAATTACACCCTCGTTATAGCCAAGATACCCCcttctgactccacacacacacacacacacacacacacacaactcagaaGACATACTAGAGTCTGGTAGCTACTAGACAGAGTGAATAATGAAGAGTTCCATTTGATATAAATTTGCCCTTCACTGAATTACCTAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2267619 True 228 lncRNA 0.40 1 41365266 41365493

Neighbor

gene id symbol gene type direction distance location
LOC110504259 LOC106603281 coding upstream 14517 41297432 ~ 41350749 (+)
si:ch211-132f19.7 LOC106611404 coding upstream 474154 40868101 ~ 40891112 (+)
dnajc27 LOC106611405 coding upstream 505212 40829046 ~ 40860054 (+)
pomca LOC100510783 coding upstream 542440 40819696 ~ 40822826 (+)
snx9a LOC105031565 coding upstream 623527 40689188 ~ 40741739 (+)
LOC110505965 trim9 coding downstream 181878 41547371 ~ 41622795 (+)
LOC110505964 LOC106611459 coding downstream 270663 41636156 ~ 41666062 (+)
LOC110505960 LOC106611458 coding downstream 311851 41677344 ~ 41737128 (+)
LOC110505959 LOC106611457 coding downstream 374680 41740173 ~ 41757394 (+)
LOC110504274 LOC106611444 coding downstream 415778 41781271 ~ 41937779 (+)
G1983473 NA non-coding upstream 336 41364684 ~ 41364930 (+)
G1983468 NA non-coding upstream 6002 41357423 ~ 41359264 (+)
G1983463 NA non-coding upstream 9235 41355823 ~ 41356031 (+)
G1983462 NA non-coding upstream 9845 41355079 ~ 41355421 (+)
G1983459 NA non-coding upstream 12930 41352027 ~ 41352336 (+)
G1983479 NA non-coding downstream 27506 41392999 ~ 41394689 (+)
G1983480 NA non-coding downstream 40724 41406217 ~ 41406464 (+)
G1983481 NA non-coding downstream 41079 41406572 ~ 41406920 (+)
G1983484 NA non-coding downstream 42801 41408294 ~ 41408540 (+)
G1983488 NA non-coding downstream 53724 41419217 ~ 41419507 (+)
G1983387 NA other upstream 148514 41215475 ~ 41216752 (+)
G1983277 NA other upstream 317364 41047551 ~ 41047902 (+)
G1982355 NA other upstream 974859 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 1811774 39543907 ~ 39557667 (+)
G1983499 NA other downstream 82909 41448402 ~ 41449340 (+)
G1983721 NA other downstream 697532 42063025 ~ 42103896 (+)
G1983777 NA other downstream 866747 42232240 ~ 42232904 (+)
G1983836 NA other downstream 896734 42262227 ~ 42262714 (+)

Expression


Co-expression Network