LOC100136774 (tgf)


Basic Information

Item Value
gene id LOC100136774
gene name tgf
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31931801 ~ 31936995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591332.2
acaaatacaatttgatttaagtTCTTCCATGTGTCTTGCCTTCCGGCAAAGTTAAAGGAAACAGCAACCCTGTACTTTGAAATGGCAGATGTGTCACAATGCCGCTCACTTCCTGGACTTAGAGCTTCATACTGTTTTTGTGCAAGAGGACAGGAACTAGACAGAAAAGCAACAGGAACTGGAATGAAAAGATCAGTGACTGATGAAGGCTGCTAAAACTAACAACTCTAGGGTCTAATAGGGTAGATGGTTTTCTACGGTGTGTtgtttttttcttatttctttgttttagtcTGAACCGTTTTAATTGACTGGATCTGGATATAGTAGACTAGAGAATGAGAAGGAGGCGGGCCTGAGCTGTAACTGTGTGGGTGAGTTAGATGATGCTGTTATGATGTCTACTCTGctctttcattttttttgtggTGGACCTCTGTCTTGAGTGTTGTCTCAAGTTTAGCATGGGAAAGTGCATCTAGTGAATGACACAGCATCGGTCTTGGAACATTTTAAATGGTTAAGTAATTGAAGCTAggaagtattttttattttttacaatgcaATACGGCTTTGTGCAATACGGTATGTTGTGTGCGTGTATTTATGTACAACTGGTTTAGACATTTACATTAATATTGTGCTCTTCTAGACTAATGAAATGGCCCTTTGCTTTGGCTTAGTCTGAAGCAGTTTATCTGATGAAAGAAGTGAGTCAGCTGACTAAAACTTTTATATTCAATAACGTTGTAGGGAGAGACTGTCACATTTGCCAAAACAAATTGTTAACTGATtttaacaaatacatttttatagagaGTTGGGAAGACAGTTGAGACAACTTGACAATTTTCATTGAGATTTTCCTCTGTTACGTTCCAAATCTCAGTTTACACAGGGTCTCGAAAGAGCTTGTTTGTTATTTTAAATTGGGTCCCAGGGACGGGGAGTAATGTGCTGTAGTTCATTCATTCATGAATTGAGACTGCCTCTAGGGAGCACTGTGAGAGTCTGTGAGGCACCATGCCAGCGAGACAGTGACTCAGTTTAGGCTGAGCTCTTTTGGTGGTGAACTCTGTGGTTCTAGTCCGGGATCTGACCTCGGCTCAAGAGCTAGCACCAGTCTCTGAGGAGCTCAACTTGAGATACTGAAGCCTCCTGGGTTGTTGTGACAGCAGCAGGAGAAGTACATTGAAATCTGTTCATGCAACAGGCTCAAAAGGACGGTAAATCCACATAATAGTCAACTCTGAAAGCCTGCTATCATAGACATTGTTCCTCTTTAAAGTGTGCAATGAGGGCAGTGTGTTTGATGCTGACTGCCTTATTGATGCTGGAATATGTGTGCCGGAGTGACACCATGTCCACCTGTAAGTCTCTGGACTTGGAGCTGGTGAAGAGGAAACGTATTGAGGCCATCCGTGGACAGATACTGAGCAAGCTGCGGCTACCTAAGGAGCCAGAGATTGACCAGGAGGGAGACACTGAGGAGGTCCCAGCTTCCCTGATGTCCATCTACAACAGCACAGTGGAGCTGAGTGAGGAGCAGGTGCACACGTACATACCGTCCACTCAGGATGCAGAGGAGGAGGCATACTTTGCAAAGGAGGTCCACAAGTTCAACATGAAACAAAGTGAGAACACCAGTAAGCACCAGATTCTCTTCAACATGTCTGAGATGCGGTCAGTATTGGGGACTGATCGACTGCTCTCTCAAGCTGAGCTCCGCCTCCTCATCAAGAACCATGGCCTGCTCGACGACAGCGAGCAGAGGCTGGAACTCTACAGAGGAGTTGGCGATAAGGCACGTTACCTGAAGTCCCATTTTGTCTCCAAGGAATGGGCCAATCGCTGGGTGTCCTTTGATGTAACACAGACTCTGAATGAGTGGCTGCAAGGGGCTGgagaggagcagggatTCCAACTGAAGTTGCCTTGTGATTGTGGGAAACCAATGGAGGAATTCCGCTTCAAAATATCAGGGATGAACAAGCTGAGGGGAGATACAGAAACACTAGCCATGAAAATGCCATCAAAGCCTCACATTTTACTGATGTCACTTCCTGTGGAACGCCACAGCCAGCTTAGCTCTCGGAAGAAACGACAAACCACTACTGAAGAGATCTGCTCAGATAAATCGGAGAGTTGCTGTGTGCGAAAACTTTACATTGACTTCCGTAAGGACCTGGGCTGGAAGTGGATCCATGAACCCACTGGCTACTTTGCTAACTACTGCATCGGCCCCTGCACCTATATATGGAACACAGAAAACAAGTATTCCCAGGTACTGGCTCTGTATAAGCACCACAACCCCGGAGCCTCTGCCCAACCCTGCTGTGTTCCACAGGTCTTGGAGCCTCTACCCATTATCTATTATGTGGGGAGACAACACAAGGTGGAGCAGTTGTCCAATATGATTGTTAAGTCCTGCAGGTGTAGCTAGAATTACTGCACATGTCTCTCCATGTTCTTGTCCATTGTATTTCCTTGTACTCATGGGGATACAAAATGGGGGCTGATCCTTTTTGATGGCGCTGGTTTAGTGTAAAATGCTTGTCCCTTGGAAATCAGGATGTAGTCAAGACATTCATTTACGAAGGGTACTATTATAATTGTGTTTGGGTGGTGTCTCTAGTCTGCATTTTTTCATTTAGCTTTCCCCAGCAgagaatttgtttatgtttagtGATGTGTTAAtgttttcttattttattttaaatatatgtAGTGCTTTGTGgagttttaaaaaatgttgtttagACTTGTCAATGTCCTGGGTGTGTCAATAGTCTTGACTTATTGTCACTGTGTTGCAGTATTTGTGCTCCCTGGGAAAtatagaggaaagagagaggctaAGACGGGATTAGTTTGGGTTTACTACTTAAAATAATGAATGTAGAATAGCAACTTCCTCTCAATATTTTTGTCATTATTCTCTTTTGAATAAATGTATCTGCATCATCACA
>TU2486384
ACGCCACAGCCAGCTTAGCTCTCGGAAGAAACGACAAACCACTACTGAAGAGATCTGCTCAGATAAATCGGAGAGTTGCTGTGTGCGAAAACTTTACATTGACTTCCGTAAGGACCTGGGCTGGAAGTGGATCCATGAACCCACTGGCTACTTTGCTAACTACTGCATCGGCCCCTGCACCTATATATGGAACACAGAAAACAAGTATTCCCAGGTACTGGCTCTGTATAAGCACCACAACCCCGGAGCCTCTGCCCAACCCTGCTGTGTTCCACAGGTCTTGGAGCCTCTACCCATTATCTATTATGTGGGGAGACAACACAAGGTGGAGCAGTTGTCCAATATGATTGTTAAGTCCTGCAGGTGTAGCTAGAATTACTGCACATGTCTCTCCATGTTCTTGTCCATTGTATTTCCTTGTACTCATGGGGATACAAAATGGGGGCTGATCCTTTTTGATGGCGCTGGTTTAGTGTAAAATGCTTGTCCCTTGGAAATCAGGATGTAGTCAAGACATTCATTTACGAAGGGTACTATTATAATTGTGTTTGGGTGGTGTCTCTAGTCTGCATTTTTTCATTTAGCTTTCCCCAGCAgagaatttgtttatgtttagtGATGTGTTAAtgttttcttattttattttaaatatatgtAGTGCTTTGTGgagttttaaaaaatgttgtttagACTTGTCAATGTCCTGGGTGTGTCAATAGTCTTGACTTATTGTCACTGTGTTGCAGTATTTGTGCTCCCTGGGAAAtatagaggaaagagagaggctaAGACGGGATTAGTTTGGGTTTACTACTTAAAATAATGAATGTAGAATAGCAACTTCCTCTCAATATTTTTGTCATTATTCTCTTTTGAATAAATGTATCTGCATCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591332.2 False 2969 mRNA 0.43 7 31931801 31936995
TU2486384 True 897 lncRNA 0.41 4 31935545 31936993

Neighbor

gene id symbol gene type direction distance location
LOC110510050 LOC106563631 coding upstream 971 31929170 ~ 31930830 (+)
LOC110510049 LOC106563630 coding upstream 4342 31924222 ~ 31927459 (+)
LOC110509422 LOC106563560 coding upstream 23255 31820484 ~ 31908546 (+)
LOC110510048 LOC106563405 coding upstream 111563 31814661 ~ 31820238 (+)
im:7138535 LOC106563406 coding upstream 127770 31799855 ~ 31804031 (+)
LOC110510052 spsy coding downstream 6610 31943605 ~ 31992800 (+)
LOC110510053 LOC106563566 coding downstream 66183 32003178 ~ 32021463 (+)
LOC110510056 LOC100194697 coding downstream 131559 32068554 ~ 32093481 (+)
LOC110509425 LOC106563572 coding downstream 178634 32115629 ~ 32150579 (+)
LOC110510057 LOC106563575 coding downstream 230306 32167301 ~ 32177009 (+)
G2175362 NA non-coding upstream 32411 31899143 ~ 31899390 (+)
G2175361 NA non-coding upstream 33807 31897725 ~ 31897994 (+)
G2175354 NA non-coding upstream 43426 31888175 ~ 31888375 (+)
G2175310 NA non-coding upstream 86121 31841862 ~ 31845680 (+)
G2175330 NA non-coding upstream 92809 31838787 ~ 31838992 (+)
G2175372 cbr1 non-coding downstream 5754 31942749 ~ 31957403 (+)
G2175377 NA non-coding downstream 56390 31993385 ~ 31994084 (+)
G2175411 NA non-coding downstream 97710 32034705 ~ 32034934 (+)
G2175667 NA non-coding downstream 108198 32045193 ~ 32046928 (+)
G2175233 psmb6 other upstream 320332 31610544 ~ 31611469 (+)
G2174785 NA other upstream 613424 31317837 ~ 31318377 (+)
LOC110510022 LOC106563433 other upstream 1107657 30817845 ~ 30824144 (+)
G2173841 LOC106563447 other upstream 1463677 30463942 ~ 30468124 (+)
G2175413 NA other downstream 100052 32037047 ~ 32037736 (+)
cxxc5a LOC106563628 other downstream 1285822 33212994 ~ 33235535 (+)
LOC110510125 LOC106563697 other downstream 2194016 34105921 ~ 34135553 (+)
LOC110510132 rin1 other downstream 2294661 34227307 ~ 34236487 (+)

Expression


Co-expression Network