im:7138535 (LOC106563406)


Basic Information

Item Value
gene id im:7138535
gene name LOC106563406
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31799855 ~ 31804031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591326.2
TATACATACAGAACCCGGAAGTACAGAGCTTCTGCAACTTTTTAACTAAACATTTGGGAAAGACGGGAAAGGAAAATTACTTGTTGCGAATGCAATAGCTACATGTTTGGATACATGTTTCAATGTGTTCTATTGAGTTTGTAATGGAGAGAGATATAGGAACGATATATGCTATAAGGGCTCTTGGGTACACAAGCAGTGTCTGTGTCAGACGGTGCAGATGTGATGAGCTTCCTTGTCCGCTGCTCACTTGGCTGGCGTCAGAATTGAGGGCTGTCTGCACAGAGTTACAGGACCAAAAGACTGGTATTGTCCTAGTGGGGGAGTTGCGGACCCTGCTGACCGAGCTACTTTGTCCCTACACTGCACTGACCACAGATCCACtgagtcctcctctcctcaacaaAGTCACTGAGTACATGGTGTCAGAATTACAAGCAGCACGTATACTTCAACATAAAGAATTACATCCAGAAGATGAGAAGAGTGAAGATAAATCTGAGAAAGAGCAGAGAGCGGAAGATCCCAGCATTGTTGATACAAAGAACTGGTGTAAAGAATATGAAGATGGCCAGGAGATGGAACAAGGTGACAGGAAGGAAGAAACAGAGCGTGAATTGGCTCTGTTGCTTCAAACCCTAAACATGGACGAGTCTTCACGGCTTACAGATGTGTGCCATCAGGTGGAGTCACGTCTTGCGGTGTTGCCGTGTGGCGATATGACAGAACCTCTGCTGGACACTAATCTCAACTCTGAGCAATGGAGGCAAGTCCAGAAGATAAATCAGGCTCTATTAGAGGACTATCATTGTCGACGCCAAATGATGATCAAACGTTTTCAGGTCACACTTCAGTCCTTTGCCTGGGGAGAGAAGGAAAAGGAGCGCAGTGAAGTGCTTGCCTCAATACCTCCACTCTCATCACTTCCCCTCATATCCCAAGTCTCCGTGTCTCTTCTGCTTGCAGCAAGAAAAGACCAATCTTACATTTTACCAGTAAAAGCAGGGGAAAGCACTAAAGTCTACAAGGTATTGATGGGCAGTGTACCAGACCGGGGTGGACGGCCAGGAGAAATTGAGGCCCCCATGCCCATgtgggagggacggagagagggagggaggggtcgtGGAGGAGGACGTGGAGGGCCACGCGGAGGGGGTGGTCAGAAACGACAGAACTTTTCTGGAAAAAAGAGAAACAAATGAGAGTAACACAATAGGTTGTATGAAGGAAATGACAAGGTAGAATTTAGCGACATGGCGATAGAGACAAACCCACAAGCAAGAAGATTTCaatatcaaaatacattttgtttacATTTATATAATTTATGCAGATCCACAAAGGTGCAGTCCTGAAATTTTGCTCAAAGTCAAATTCGACAACAAAATGTGTTGATGTGGAATTTAAATTAAATTGAAGAAATATGTTAATAAGGATAGGCTATAATCGATTTGTGATATTTTTGAGGGGGACAAATAGGAAGTTGATTATGTGGATTAAAAGAAAgtgtctttttttttaaatacttgaGAATATATTGCTTATGTTAGAAACCTGTAGAGTCTATTTGTTTGATTGATTACTTCAATATCGTTTAAATGTCACTATCTGTTTAAATAAAGCCTTAGGTACTTCCTTGTA

Function

NR:

description
protein FAM98B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591326.2 True 1644 mRNA 0.43 8 31799855 31804031

Neighbor

gene id symbol gene type direction distance location
hnrnpul1l hnrl1 coding upstream 384 31789832 ~ 31799471 (+)
napaa napa coding upstream 28081 31761289 ~ 31771774 (+)
LOC110509421 LOC106563415 coding upstream 76830 31701698 ~ 31723025 (+)
st14b LOC106563416 coding upstream 98284 31690146 ~ 31701571 (+)
neu3.1 neu3 coding upstream 117736 31679071 ~ 31682119 (+)
LOC110510048 LOC106563405 coding downstream 10630 31814661 ~ 31820238 (+)
LOC110509422 LOC106563560 coding downstream 16453 31820484 ~ 31908546 (+)
LOC110510049 LOC106563630 coding downstream 120191 31924222 ~ 31927459 (+)
LOC110510050 LOC106563631 coding downstream 125139 31929170 ~ 31930830 (+)
LOC100136774 tgf coding downstream 127770 31931801 ~ 31936995 (+)
G2175282 NA non-coding upstream 91096 31708533 ~ 31708759 (+)
G2175281 NA non-coding upstream 91579 31708065 ~ 31708276 (+)
G2175265 NA non-coding upstream 128031 31671515 ~ 31671824 (+)
G2175264 NA non-coding upstream 129909 31669301 ~ 31669946 (+)
G2175240 NA non-coding upstream 154893 31641604 ~ 31644962 (+)
G2175314 NA non-coding downstream 2010 31806041 ~ 31806768 (+)
G2175316 NA non-coding downstream 7512 31811543 ~ 31811774 (+)
G2175318 NA non-coding downstream 8788 31812819 ~ 31813213 (+)
G2175327 NA non-coding downstream 29331 31833362 ~ 31833571 (+)
G2175233 psmb6 other upstream 188386 31610544 ~ 31611469 (+)
G2174785 NA other upstream 481478 31317837 ~ 31318377 (+)
LOC110510022 LOC106563433 other upstream 975711 30817845 ~ 30824144 (+)
G2173841 LOC106563447 other upstream 1331731 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 1459164 30336852 ~ 30355090 (+)
G2175413 NA other downstream 233016 32037047 ~ 32037736 (+)
LOC110509425 LOC106563572 other downstream 317739 32115629 ~ 32150579 (+)
cxxc5a LOC106563628 other downstream 1418786 33212994 ~ 33235535 (+)
LOC110510125 LOC106563697 other downstream 2326980 34105921 ~ 34135553 (+)

Expression


Co-expression Network