RNA id: XM_021591332.2


Basic Information

Item Value
RNA id XM_021591332.2
length 2969
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC100136774
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31931801 ~ 31936995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaatacaatttgatttaagtTCTTCCATGTGTCTTGCCTTCCGGCAAAGTTAAAGGAAACAGCAACCCTGTACTTTGAAATGGCAGATGTGTCACAATGCCGCTCACTTCCTGGACTTAGAGCTTCATACTGTTTTTGTGCAAGAGGACAGGAACTAGACAGAAAAGCAACAGGAACTGGAATGAAAAGATCAGTGACTGATGAAGGCTGCTAAAACTAACAACTCTAGGGTCTAATAGGGTAGATGGTTTTCTACGGTGTGTtgtttttttcttatttctttgttttagtcTGAACCGTTTTAATTGACTGGATCTGGATATAGTAGACTAGAGAATGAGAAGGAGGCGGGCCTGAGCTGTAACTGTGTGGGTGAGTTAGATGATGCTGTTATGATGTCTACTCTGctctttcattttttttgtggTGGACCTCTGTCTTGAGTGTTGTCTCAAGTTTAGCATGGGAAAGTGCATCTAGTGAATGACACAGCATCGGTCTTGGAACATTTTAAATGGTTAAGTAATTGAAGCTAggaagtattttttattttttacaatgcaATACGGCTTTGTGCAATACGGTATGTTGTGTGCGTGTATTTATGTACAACTGGTTTAGACATTTACATTAATATTGTGCTCTTCTAGACTAATGAAATGGCCCTTTGCTTTGGCTTAGTCTGAAGCAGTTTATCTGATGAAAGAAGTGAGTCAGCTGACTAAAACTTTTATATTCAATAACGTTGTAGGGAGAGACTGTCACATTTGCCAAAACAAATTGTTAACTGATtttaacaaatacatttttatagagaGTTGGGAAGACAGTTGAGACAACTTGACAATTTTCATTGAGATTTTCCTCTGTTACGTTCCAAATCTCAGTTTACACAGGGTCTCGAAAGAGCTTGTTTGTTATTTTAAATTGGGTCCCAGGGACGGGGAGTAATGTGCTGTAGTTCATTCATTCATGAATTGAGACTGCCTCTAGGGAGCACTGTGAGAGTCTGTGAGGCACCATGCCAGCGAGACAGTGACTCAGTTTAGGCTGAGCTCTTTTGGTGGTGAACTCTGTGGTTCTAGTCCGGGATCTGACCTCGGCTCAAGAGCTAGCACCAGTCTCTGAGGAGCTCAACTTGAGATACTGAAGCCTCCTGGGTTGTTGTGACAGCAGCAGGAGAAGTACATTGAAATCTGTTCATGCAACAGGCTCAAAAGGACGGTAAATCCACATAATAGTCAACTCTGAAAGCCTGCTATCATAGACATTGTTCCTCTTTAAAGTGTGCAATGAGGGCAGTGTGTTTGATGCTGACTGCCTTATTGATGCTGGAATATGTGTGCCGGAGTGACACCATGTCCACCTGTAAGTCTCTGGACTTGGAGCTGGTGAAGAGGAAACGTATTGAGGCCATCCGTGGACAGATACTGAGCAAGCTGCGGCTACCTAAGGAGCCAGAGATTGACCAGGAGGGAGACACTGAGGAGGTCCCAGCTTCCCTGATGTCCATCTACAACAGCACAGTGGAGCTGAGTGAGGAGCAGGTGCACACGTACATACCGTCCACTCAGGATGCAGAGGAGGAGGCATACTTTGCAAAGGAGGTCCACAAGTTCAACATGAAACAAAGTGAGAACACCAGTAAGCACCAGATTCTCTTCAACATGTCTGAGATGCGGTCAGTATTGGGGACTGATCGACTGCTCTCTCAAGCTGAGCTCCGCCTCCTCATCAAGAACCATGGCCTGCTCGACGACAGCGAGCAGAGGCTGGAACTCTACAGAGGAGTTGGCGATAAGGCACGTTACCTGAAGTCCCATTTTGTCTCCAAGGAATGGGCCAATCGCTGGGTGTCCTTTGATGTAACACAGACTCTGAATGAGTGGCTGCAAGGGGCTGgagaggagcagggatTCCAACTGAAGTTGCCTTGTGATTGTGGGAAACCAATGGAGGAATTCCGCTTCAAAATATCAGGGATGAACAAGCTGAGGGGAGATACAGAAACACTAGCCATGAAAATGCCATCAAAGCCTCACATTTTACTGATGTCACTTCCTGTGGAACGCCACAGCCAGCTTAGCTCTCGGAAGAAACGACAAACCACTACTGAAGAGATCTGCTCAGATAAATCGGAGAGTTGCTGTGTGCGAAAACTTTACATTGACTTCCGTAAGGACCTGGGCTGGAAGTGGATCCATGAACCCACTGGCTACTTTGCTAACTACTGCATCGGCCCCTGCACCTATATATGGAACACAGAAAACAAGTATTCCCAGGTACTGGCTCTGTATAAGCACCACAACCCCGGAGCCTCTGCCCAACCCTGCTGTGTTCCACAGGTCTTGGAGCCTCTACCCATTATCTATTATGTGGGGAGACAACACAAGGTGGAGCAGTTGTCCAATATGATTGTTAAGTCCTGCAGGTGTAGCTAGAATTACTGCACATGTCTCTCCATGTTCTTGTCCATTGTATTTCCTTGTACTCATGGGGATACAAAATGGGGGCTGATCCTTTTTGATGGCGCTGGTTTAGTGTAAAATGCTTGTCCCTTGGAAATCAGGATGTAGTCAAGACATTCATTTACGAAGGGTACTATTATAATTGTGTTTGGGTGGTGTCTCTAGTCTGCATTTTTTCATTTAGCTTTCCCCAGCAgagaatttgtttatgtttagtGATGTGTTAAtgttttcttattttattttaaatatatgtAGTGCTTTGTGgagttttaaaaaatgttgtttagACTTGTCAATGTCCTGGGTGTGTCAATAGTCTTGACTTATTGTCACTGTGTTGCAGTATTTGTGCTCCCTGGGAAAtatagaggaaagagagaggctaAGACGGGATTAGTTTGGGTTTACTACTTAAAATAATGAATGTAGAATAGCAACTTCCTCTCAATATTTTTGTCATTATTCTCTTTTGAATAAATGTATCTGCATCATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486362 lncRNA upstream 32411 31899143 ~ 31899390 (+) True G2175362
TU2486361 lncRNA upstream 33807 31897725 ~ 31897994 (+) True G2175361
TU2486354 lncRNA upstream 43426 31888175 ~ 31888375 (+) True G2175354
TU2486337 lncRNA upstream 69484 31861984 ~ 31862317 (+) False LOC110509422
TU2486301 lncRNA upstream 86121 31841862 ~ 31845680 (+) True G2175310
TU2486378 lncRNA downstream 5754 31942749 ~ 31957403 (+) True G2175372
TU2486392 lncRNA downstream 56390 31993385 ~ 31994084 (+) True G2175377
TU2486421 lncRNA downstream 69152 32006147 ~ 32021423 (+) True LOC110510053
TU2486436 lncRNA downstream 97710 32034705 ~ 32034934 (+) True G2175411
TU2486759 lncRNA downstream 108198 32045193 ~ 32046928 (+) True G2175667
XM_021591331.2 mRNA upstream 971 31929170 ~ 31930830 (+) True LOC110510050
XM_021591329.2 mRNA upstream 4342 31924222 ~ 31927459 (+) True LOC110510049
XM_036968227.1 mRNA upstream 23255 31820484 ~ 31908546 (+) False LOC110509422
XM_021591327.2 mRNA upstream 111563 31814661 ~ 31820238 (+) False LOC110510048
XM_021591328.2 mRNA upstream 111563 31814661 ~ 31820238 (+) True LOC110510048
XM_036968365.1 mRNA downstream 6610 31943605 ~ 31992800 (+) False LOC110510052
XM_021591335.2 mRNA downstream 40033 31977028 ~ 31992800 (+) False LOC110510052
XM_021591334.2 mRNA downstream 40065 31977060 ~ 31992800 (+) True LOC110510052
XM_036967888.1 mRNA downstream 66183 32003178 ~ 32021463 (+) False LOC110510053
XM_036967890.1 mRNA downstream 66186 32003181 ~ 32021463 (+) False LOC110510053
TU2486351 other upstream 30565 31900981 ~ 31901236 (+) True LOC110509422
TU2486199 other upstream 320332 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 613424 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 1107657 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1463677 30463942 ~ 30468124 (+) True G2173841
TU2486438 other downstream 100052 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 184775 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1285822 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1285822 33222817 ~ 33235535 (+) True cxxc5a
TU2488718 other downstream 2194016 34131011 ~ 34135399 (+) True LOC110510125

Expression Profile