RNA id: XM_021591328.2


Basic Information

Item Value
RNA id XM_021591328.2
length 3890
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110510048
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31814661 ~ 31820238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcctactatATCAGTACACTCATAGCAACATGAGCATTTCGAAACTTCTAATCGATCAAATAAACCACACGTAGCAAATAAACGATATAAAAAAATGTGTTAACCAAATTTAacacattgacctccatacaaaaaaacGCCACCTGCTGAAGACAGGTTTTGGGCAGTTATCCCTCTTCTCTGAGCCGTTTTCGCCGTGTGCTTTGAACGCGGTACCTGGTTCACACCCGGTAGGCAGTCCCGTAACAAAACTAATATATTTTTTACCCGGTGTAAACTCCTCTCACCGGTGTAACCCGGGCCAGATAATCGAATTCCCCCAGGGGTGGTAGGATGAGAGGATCAGAGAAGTGCAACATCGGCTACATAATTTTTCTACGTAGCTGTCCACATTTAAGTTTTCCGAACTGGACCTACCAATGCCAAACCCCATGGACGACCGTCTGCGCGTGGTGGCCGTGATACATGCTTTGAAAGCATCTGGAGTTCGCGTGAAAAATTGGAAGAACTTCTTCAATGGGCCATACACGAGTGGCCCTGTCAGACTGGAGAACCAATCTCAATTTGCCTTTGGTCGGGACCTGATCTTGCTGCCCCAGTGCCATTTAACTGATATGAGTGGGACAGTGCCAAAGTTCTTGGTTGATGCCTGTGAATTTTTATCCCAGCATCTTCATACTGAAGGGCTGTTTCGAAAGACGGGGTCATTGAGTCGGATCCGTGCTTTGAAGGCTGACCTGGAGCAGGGGGAGCCAGTCTTTTCTCTGCCACATTCAGCCACTCTGCAGTCCTGTGATGTGGCGTCTCTTGTGAAGCAGTTCTTACGGGAGTtgccctctcccctcatccctatGGATCTACAGGTGCCACTGTGCTGTGCACAGGgcttagaggaggaggggggccaGGAGCAGGGTAAAGATGGAGTCACTCTTCTTCTTACAGCCCTGTTCCCTCTTTCTCATTCACGGGCCCTCCGATACTTCTGCACTTTCCTGAGACAGACGGCTCAAAGATGTGAAGAGAATCGTATGGAAGTGGGCAGTCTGGCCCTTGTGATTGCACCTAATTTGCTACATTGTCCAGCTGGGGGCTCTAAACTGACCGCAGGCACAGAGAGACAACTGGATAGACAAGCAGCAGTGATCAAGACACTCATAATACATGCAGATCGTATCGGTGTCGTTCCCCCTTCTATTATGGACATGGCAACTGTAGCAGAGTCGGGTGAATCCACTACACCCCCAGTTGACGGAGGGAGATTTCAGGAGAGGGCAGGACTTGGTGTGTATAGAAGTTTAAGACGTCAAAGGAGGCGCAGTGTTGGAGagatatttgtGGATGCTCTCAGTAAATTCAAGACAGGCCGCACACACACTGGCCCTTCACACCCCACAGACGGCCGGCAAAATACAAAGAcatctcaccacaccacacctcaatCACCAGTCACATCCAAACGAAAATCGAGTGAAGATACTGTCCCTGATGTAGAGGGCTCTGCTAAAAAaagACGCTCTATCCATGACCTAAGAAAAGACAACCAATCCATCAGCAAACTACATTCAAATGACTCCCAGTCGGCAGTCGGCCAAAGCCTTTCCAGTACTCACACCTCTGTCCTGAGTGTAGGGGAGGGCAGTAGGGAGCAGGAGCTGTCTGTCACTCTCAGTGCCTcagagaagaggaggaatcaCAAAAAATATCATAAAACGTCAAACAAGCATCCGGTGCAAGATGACAAGGCTCATCGAAGGAGATCTCTCAGATTCTTCAACATGCCAAGCTGGAGCAGCCCTAACCCTTCCCCCACACCCATTGAGAAGGACACTGAGAATTGGATCATGGGCAGTAGGACGGTATCTGATGGTATGACTGAAGCATCCAGCTCTGAGGCTGAACAGTACAGGATTCCTGTCAAAATGATTGATGGCCCTGGACGAGTTCTAGTGGGGAATGAGATGGAGGCTAAACCTGATCTGCTGAACTACAGCTTTGCTGAAAATCTTGATGACTTCCTGGATCTCGTGACATTGGACTCTCCTACCGGGACAGAAGATGGGGAATCACATGCATGCTCTGTGCTCAAGTTGGAAAATGAGACAATAGAGGAAACAGTTTCATGCTGTCTGACTAACAGTGTATTTAGGGGTCCTGAGCAGGTTGGGATAAAAGAAGAGATGGGTCTAAGTAAGAAGCTGTCAACAGTGGATATGTCTGACAGGGTTGGTCAGAAGCCCAGTCGACCTCGTCGCTCATTCAGTATGCCAGAGGTGACATTGGACCAACTGAGGATTCAAGATGAAATAGACGACaaggagaaaacagagaaaaaagATGGAGTCTTTGAGGACACCTGGGTAATGGTGGAGGAACCCCAACAAGCCAGAACCAGAACCGTGGTGGATGAAGGGCTGGGTAAAGGAATGGATGAAGCAGAAGAGTTGGAGGAAAAACCATTGGTGAAGAAAGAGAAGATAACAGAGTCAGGACTCAGGTTTAAGAGGACACATCAGCTATTGTCTTTAGCAGAGCAGCTCAGGCGTTTCAACGCTCTGGCAACACTGCTCCGTAGCCCCAGGGTTTCTCACCCTCCCCCTGAACCCCAGCTCAACGATGTCCTGCATGAGAGTCAGCGGGAAGGGGGTCAGGGGAGTGTTGTCCATCTGCGTCGGCAGGGAGAAAGACGGTTTGGACGCTCCATCAGTCACGATGGTGTTCCCGGATCTTTTCCAGGACAAGCTCCTAAAAATCAGCAGGATGAGCCAGGGGTTTTTCAAAGCCCCAGTGAGACAGTTCTATGTTCACCACCAAAGCCAACTCTAAGTCTTTATCAATTTGCCCAAGAGGGGCAGAATGAAATCCAACATACTCCAGATCCTCAACTACAACAGGATAACTCCTTGCAAACCCTCCAGTATTTGTGTACTCCTCCATCACTAAATCCAAAGCCGAACCAGGGATCTCGCCAAGGGCAATTTAACAAATCACAACTGCATCTCAGGGAAAGCCAACTGAAACTGTTGGAGGAACAATACACAGAGTCAGGTCTGCATGACCTGCTGGAGATGCACTTGAATATATGTGATCCAAAGGAGGAGCAAGGGCAATACCTTACAGTTCCAATGCAGTTTGATAGACCGTCTCAGACAGACACTATCTTAGATGTTCTACCTCAGACCATGGTCCCCCTACAGCAGAAGCCCCAAACTACTGAAGTCAAACTTCCTATCCcttctcctctaacccctcctctctctcaaacAGAAACATGCTCTCCCAGTCCCAGTATACCCTCTTCCACAACGATAGACAGAACATCATCAACTAAACTCTACACTGTTCCATTAGTGGCTAACTGCTCCCCTACCTCTGTCACGGCTTTCGACTTTATAGAGGTCGACAGAGGGGTCAGTGAGAGTGATGGGTCTTCTCTTCCTGTGGAATTATCTCCACCCCCAGTCTTGCAGTTCAGTCACCTGGCCACCAGGAGAGGCTACAGAGATTCGCCTCGCTGGCCTATCCATGATATTAGCATTGCCACAGGGGACCCCGTTCATATATACCTTGGTGCAGGGGACCATCTACAGATATGACATGTACAGGATATACAAAGTGGTTCTTTGTTTGTAGTGCTTTGGTTTTGAGTATTAGGGTTTTAAAATGGGTAAATAAAACCACACAAAGAATGGCATCTGTTGCTTGATGTAATTGTGCCAAGTTATATcctcacatttttattttatgatGCTTTCATGAAGTTGTTTTTATTAGTCTCTGTTATGTTTTGTTATTATTGTGTCCGAAGTTGCATTTGACATATCTCAGACTATATTTCATTTGCTTATTCTTTATCTATTcagttttaataaaaaaatatatttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486309 lncRNA upstream 1448 31812819 ~ 31813213 (+) True G2175318
TU2486307 lncRNA upstream 2887 31811543 ~ 31811774 (+) True G2175316
TU2486305 lncRNA upstream 7893 31806041 ~ 31806768 (+) True G2175314
TU2486266 lncRNA upstream 105902 31708533 ~ 31708759 (+) True G2175282
TU2486265 lncRNA upstream 106385 31708065 ~ 31708276 (+) True G2175281
TU2486319 lncRNA downstream 13124 31833362 ~ 31833571 (+) True G2175327
TU2486320 lncRNA downstream 13693 31833931 ~ 31834164 (+) False LOC110509422
TU2486321 lncRNA downstream 18064 31838302 ~ 31838568 (+) True G2175329
TU2486322 lncRNA downstream 18549 31838787 ~ 31838992 (+) True G2175330
TU2486301 lncRNA downstream 21624 31841862 ~ 31845680 (+) True G2175310
XM_021591326.2 mRNA upstream 10630 31799855 ~ 31804031 (+) True im:7138535
XM_021591325.2 mRNA upstream 15190 31789832 ~ 31799471 (+) True hnrnpul1l
XM_021591320.2 mRNA upstream 42887 31761289 ~ 31771774 (+) False napaa
XM_036967188.1 mRNA upstream 42887 31761289 ~ 31771774 (+) True napaa
XR_005040432.1 mRNA upstream 91636 31701698 ~ 31723025 (+) True LOC110509421
XM_036968227.1 mRNA downstream 246 31820484 ~ 31908546 (+) False LOC110509422
XM_021591329.2 mRNA downstream 103984 31924222 ~ 31927459 (+) True LOC110510049
XM_021591331.2 mRNA downstream 108932 31929170 ~ 31930830 (+) True LOC110510050
XM_021591332.2 mRNA downstream 111563 31931801 ~ 31936995 (+) False LOC100136774
XM_036968365.1 mRNA downstream 123367 31943605 ~ 31992800 (+) False LOC110510052
TU2486199 other upstream 203192 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 496284 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 990517 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1346537 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 1473970 30336852 ~ 30340691 (+) False G2173761
TU2486351 other downstream 80743 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 216809 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 301532 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1402579 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1402579 33222817 ~ 33235535 (+) True cxxc5a

Expression Profile