RNA id: TU2486266


Basic Information

Item Value
RNA id TU2486266
length 227
lncRNA type intronic
GC content 0.33
exon number 1
gene id G2175282
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31708533 ~ 31708759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaacatctcaaggattgtcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaagggtccaaatacttatgtaaataaggtattttgcaaacatttctaaaaacttgtttttgctttgtcattatggggtattgtatgtagttGTATTGgtgaaaaaatgtatttaatcaattttagaataaggctgtaacgtaacaaaatgtggaaaagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486265 lncRNA upstream 257 31708065 ~ 31708276 (+) True G2175281
TU2486244 lncRNA upstream 36709 31671515 ~ 31671824 (+) True G2175265
TU2486243 lncRNA upstream 38587 31669301 ~ 31669946 (+) True G2175264
TU2486213 lncRNA upstream 63571 31641604 ~ 31644962 (+) False G2175240
TU2486217 lncRNA upstream 63626 31641604 ~ 31644907 (+) True G2175240
TU2486305 lncRNA downstream 97282 31806041 ~ 31806768 (+) True G2175314
TU2486307 lncRNA downstream 102784 31811543 ~ 31811774 (+) True G2175316
TU2486309 lncRNA downstream 104060 31812819 ~ 31813213 (+) True G2175318
TU2486319 lncRNA downstream 124603 31833362 ~ 31833571 (+) True G2175327
TU2486320 lncRNA downstream 125172 31833931 ~ 31834164 (+) False LOC110509422
XM_021591313.2 mRNA upstream 6962 31690146 ~ 31701571 (+) True st14b
XM_021591311.2 mRNA upstream 26414 31679071 ~ 31682119 (+) False neu3.1
XM_036967837.1 mRNA upstream 26414 31679071 ~ 31682119 (+) False neu3.1
XM_021591310.2 mRNA upstream 26414 31679072 ~ 31682119 (+) True neu3.1
XM_021591308.2 mRNA upstream 48813 31653478 ~ 31659720 (+) True chrdl2
XM_021591320.2 mRNA downstream 52530 31761289 ~ 31771774 (+) False napaa
XM_036967188.1 mRNA downstream 52530 31761289 ~ 31771774 (+) True napaa
XM_021591325.2 mRNA downstream 81073 31789832 ~ 31799471 (+) True hnrnpul1l
XM_021591326.2 mRNA downstream 91096 31799855 ~ 31804031 (+) True im:7138535
XM_021591327.2 mRNA downstream 105902 31814661 ~ 31820238 (+) False LOC110510048
TU2486199 other upstream 97064 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 390156 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 884389 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1240409 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 1367842 30336852 ~ 30340691 (+) False G2173761
TU2486351 other downstream 192222 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 328288 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 413011 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1514058 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1514058 33222817 ~ 33235535 (+) True cxxc5a

Expression Profile