RNA id: XM_021591325.2


Basic Information

Item Value
RNA id XM_021591325.2
length 3856
RNA type mRNA
GC content 0.46
exon number 16
gene id hnrnpul1l
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31789832 ~ 31799471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTCAAATATTACCTACAAGGCCTCTAGCCAATCACAGAGCAGACGGCAAGCGCTAACCTTTTCTGGCTACAACAGAATCGTCCATTTTGTTTCAGTTGAGTTGGTCGCTGCATGAATCAAGCAAGGAAATTATAAGAGTGAGAAAAGAGATTGGAATTTCTGATCACTGAATAAGTTGCATGAAAGATGAGTGGAATCAATGTGAAGAAGCTCAAAGTCAATGAGCTGAAAGAGGAACTTCAGCAGCGAGGCCTGGATACTCGTGGGCTGAAGGCGGATCTTGTCATAAGGTTGCAATCAGCACTTGAGGCCGAGGCTGCAGGTGAAGAGGGCGGGCCACCGACTGCTGATGTTGGGGGGGATGAGGAACACGATATTGGCGCAGATGGCGACGACTACTCAGATGAAGTTAAAGATGATGGGGAAGAAGACCAAGATGGTGAGGACGATGAAGTACAGTTTGTCCCGCAGGCTAAAGAAGAAAAGTTTAATGAGGAGAAAGGTGATGGTGAACATAGTGAAGATGAGCAGGAAGAAGACAGCCGGGATGGGGCACAGGAAGACAGCCGAGAAGGGGCACAGGTGTTAGAACCAGAGAGAGCAGAACCAGAGATGGAGGAACCAGAGCCACCACAACCAGAACCTGTGCAACCAGTACTTGTGCAATCAGAGCCACCACAACCAGAGGCTATGAAACCTGAATCAGTGCAACCTAAGCCAGTGGACCCAGCATCAATTGAGCCTGAAGCAAAGTGTGTGGAGATGTCTGAAATTAAGTCAGATGAGTTTGTGATGAAAGCAGATTTGAAAAAAGAGGCAGATGAACCTCTGCAGCAGGAGCAGTTGAAGAAGGAGCCAAAGCAGCCAGAGGCACATCTTCCAGATGCTGCCAATGAATGCGAGGCCATGGAGGCTGAGCAGGTGAGCCAAGCAAAAACGGAGGATGACCGATGCAACCGTAAGAGGCCATACGATGAAGGCCGTGGCTATGGCTATTATGAACACCGAGAGGAAAGAAGGGCACGTTCTCCACAGCCCCcagcagaggaagaggaagaagatttTGATGACACTCTTGTGGCTATTGATACGTATAATTGCGATCTGCACTTCAAGGTATCACGTGACCGGTATAGTGGATACCCGCTCACCATCGAAGGTTTTGCATACCTGTGGTCAGGTGCACGAGCTTCCTATGGTGTCAACAAAGGGCAAGTCTGCTTTGAAATGAAGATAAACGAGGAGATCTCTGTGAAGCACCTTCCCAGCAGTGAGCCTGATCCACATGTAGTGCGCATTGGCTGGTCCTTGGATACCTGCAACACCCAGCTCGGTGAAGAACATTTCTCTTATGGCTATGGAGGAACTGGCAAGAAATCTTCAAATTGTAAATTTGAGGATTACGGGGAAAAGTTTAGTGAAAATGATGTCCTTGGATGCTACATTGACTTCGATAGCGGTGAGGAAGTGGAGATGGCCTTCTCAAAGAACGGCAAGTGGCTGGATGTGGCCTTCCGTGTGTCACGGGAGGAGTTAGCTAAACAGCCACTCTTTCCCCACGTTCTTGTGAAGAACTGTGCAATTGAATTTAACTTCGGCCAGAAAGAGGAGCCCTTCTTCCCCCTGCCTGAGGGATACACCTTCATTCAGAACGTCCCTCTGGAAAACAGGATACGGGGAACAGTTGGGCCTGCAACCAAGGCTGACTGTGAGCTCTTGATGATGGTTGGCCTGCCTGCATCTGGGAAAACCACCTGGGCCTCAAAACACGCGACAGAGCACCCTGCAAAGAAATACAACATCCTCGGCACCAATGCCATAATGGAGAAGATGAAGGTGATGGGACTGCGTCGTCAGAAGAACTATGCTGGTCGCTGGGATGTCCTGATCCAGCAGGCCACACAGTGTCTGAACAGGTTGATCCAGATTGCTGCCCGCAAGAAGCGTAACTACATCCTGGATCAGACAAATGTATATGGATCAGCCCAGAGACGAAAAATGCGTCCTTTTGAAGGTTTTCAACGCAAGGCTATTGTAATTTGTCCCACGGACGAGGATTTAAAAGAGCGAACGTTAAAGCGAACTGATGAGGAAGGGAAGGATGTGCCCGATCATGCCGTATTAGAAATGAAAGCCAACTTTGTGCTCCCAGAAGCTGGTGAGTTTCTTGACAACGTGACTTTCATCGAGCTTCAAAAAGAAGAGGCTGACACGCTGGTGAAGCAGTACAACGAGGAGGGCCGCAAAGCCGGCCCACCCCCTGACAAACGCTTCGACAACCGCCAGGGAGGTTTCCGTGGTCGCGATGCACCTTATCAGCGCTATGACAACCGTGGTGGCTCccaaggaggaaggggaggctaCCAGAGTCGTGGTGGACCCCAAGGTGGCAACTTCAGAGGAGGCTATAACCGTGGAGGCTACCAGCAGAACCGTTGGGGAGGCAACCGGGATGGCGCAGCAGGAGGGCAACATGGCTACAACCGCAACCAACAATCTGGAGGGAGCTACAATCAACACCGCCAGGGACAATATAACAAGGGAGCCACTGGCAGTTACAGCCAAGGACAGCCACAGACATACAATCAGGGCTATAATCAAGGCTACAATCAAGGCAACTACAACCAAGGTTACAACTACGGCAGCTACAGCCAGTACCCAGGTTACAGCCAGAGCTATAGCCAAactcctgctgctcctgctgccgctgctgctgctcctgccgCCACTGGACAGACCTACAGCCAGCAGCAGCAGAACTACAACCAGCAGTATCAACAGTATGCACAGCAGTGGCAGCAGTATTACCAGAACCAGAGCCAATGGAATCAGTACTACAGCCAATACGGCAACTATGGCAACTACAGCCAGGGTTCTCAGGGCTCCCAGGGCacgcagtaggcctacagtagtgcACTGATGAGACGGATCCATTCCCTGAGCAGCATTCCATTGCTTATCCTGCCTGCAGGCTACACCTGTCTTTTCGTCCTCATCTCCTTAATGATTAGTCTTCCCTTTCTTATAGCTAACATTTTCAAGGTTTTCTTTTCAGGGTCTAGTGGTTTTTCTCCCTGCCTTTCTGGTATAGGATTTATTTTTTCATGTCACGCCACAACATTAGCATTGTTTTTGCAGTAGGTCCTGCAACCATTTAGTAACATTAAGCTTATTTGTCTTGCCTGTTTGTAGACCCTGGCTATTTTAAATGAGCAACAGTGGTGTAGTTTAACATGCATATGTAGTACACTTTTCAGTGTTGTGCAGTGAATGTTTATTAGAGCTCATAAAAGGTAGCTGGGATTTGCATGTGTACATTTCAATGTGTTTTTAAGAGAGATGGAAGATTGTAGGagaacattttgtttttgttttaatatTTTGCTGTTTACGTGTCATTTTTAGTTTTAGATGTTAGATCAAAGAACCATACATTTTAAAGAAATTGGTGTAGAGTCTGGActaattatatatataaaaaaaaaaatgtatcttcaaCTGTTGAGGTTTTGATTTAATCCATTAATATTTTGCCCATATTTATTGAAATTAAAGTCTTGAAGACAAACATTTTGATTACTTTTTTCTATAACCTGTATAAAGAGAGCTTGTAAAACAACATTTACCAAAATGTATTGTTTCACACCATTTAAAACGTTCTGTAACAGTGGTGGTCATCTATTGTCCCTCCAACTTGTTTTTCCAATCTTTGTGATCATTAACTAGTTTCATGTGTGGTTGTAAAACTTTTTTATACCATATACCATGTATGTAAAACAGTATCTGCATGTGGTTCTGTGTTAAATCAAAACTTACTCTTTTTGTATTTGAGAATAAAATCTGAAGACTTTG

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15047 HNRNPUL1, E1BAP5; heterogeneous nuclear ribonucleoprotein U-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486266 lncRNA upstream 81073 31708533 ~ 31708759 (+) True G2175282
TU2486265 lncRNA upstream 81556 31708065 ~ 31708276 (+) True G2175281
TU2486244 lncRNA upstream 118008 31671515 ~ 31671824 (+) True G2175265
TU2486243 lncRNA upstream 119886 31669301 ~ 31669946 (+) True G2175264
TU2486217 lncRNA upstream 144925 31641604 ~ 31644907 (+) True G2175240
TU2486305 lncRNA downstream 6570 31806041 ~ 31806768 (+) True G2175314
TU2486307 lncRNA downstream 12072 31811543 ~ 31811774 (+) True G2175316
TU2486309 lncRNA downstream 13348 31812819 ~ 31813213 (+) True G2175318
TU2486319 lncRNA downstream 33891 31833362 ~ 31833571 (+) True G2175327
TU2486320 lncRNA downstream 34460 31833931 ~ 31834164 (+) False LOC110509422
XM_021591320.2 mRNA upstream 18058 31761289 ~ 31771774 (+) False napaa
XM_036967188.1 mRNA upstream 18058 31761289 ~ 31771774 (+) True napaa
XM_036967831.1 mRNA upstream 66807 31701698 ~ 31723025 (+) False LOC110509421
XM_021591326.2 mRNA downstream 384 31799855 ~ 31804031 (+) True im:7138535
XM_021591327.2 mRNA downstream 15190 31814661 ~ 31820238 (+) False LOC110510048
XM_021591328.2 mRNA downstream 15190 31814661 ~ 31820238 (+) True LOC110510048
XM_036968227.1 mRNA downstream 21013 31820484 ~ 31908546 (+) False LOC110509422
XM_021591329.2 mRNA downstream 124751 31924222 ~ 31927459 (+) True LOC110510049
TU2486199 other upstream 178363 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 471455 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 965688 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1321708 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 1449141 30336852 ~ 30340691 (+) False G2173761
TU2486351 other downstream 101510 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 237576 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 322299 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1423346 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1423346 33222817 ~ 33235535 (+) True cxxc5a

Expression Profile