RNA id: XM_021591311.2


Basic Information

Item Value
RNA id XM_021591311.2
length 2693
RNA type mRNA
GC content 0.43
exon number 3
gene id neu3.1
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31679071 ~ 31682119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAAAACGTTTAGCAACAGACACGTTTACTCCAAATGGAAATGTGCAAATTTGCAACAAAAACGAGAGTTTCAATTGGACAAATTCATGTTGGTAGCGGTGTTGTTCCATATGCTCTGTTTGCCCCCGTTTGGTTCTTCAACGGTAAACGGTTTCCGTTGCAggacgtaatgaatacaccccagacgAGCTACGTACGCTGTTATTTCACGACACGCTTCCACATTTAACAGCGAaaggaaaaataataataataaatagttTTAGAGGTAGCTAACGCTATGCTCGTTTTAACTGGGTCTCACGACTCAACGGTGTGATTTGTAGGCTAAGAAGCCTGCTCCTTAGGAACCAGCAATTTCAGCTATGGGGAACACATCATCAAGGAGTTATTTACCAGGAATCGAAATGCAACCTGCAAAAACAACTCTGTTCAAACAGGAGCAAACTGGGACAAGATACAGAATTCCAGCTCTCATTTACCTAAAAGAGAGTCAGACATTCCTTGCCTTTGCAGAAAAGCGCTCTTCCCTCAGTGACAGTGATGCAAAAAGTATTGTTATGAGGCGAGGAACTCAACAAAATGGATCCACTCAGTGGTCAGAATCCCAGGAGCTGTTGTCAGCATGTTTACCAGACCACCGCACCATGAACCCCTGCCCGGTGTATGAGAAGAATACCAAGACTCTATTCCTGTTTTTCATCTGCATTTTAGGGAACACTTCAGAGCACCATCAGATCAGGACAGGCAAGAATAAGGCCCACCTGTGCTACATCACCAGTAATGATGAGGGCCAGAGCTGGAGCCCGACAAAGGACTTGACAGAGAGTGTGATTGGCAAAACGGTCAGAAGGTGGGCTACATTTGCTGTGGGACCAGGCCATGGCATTCAAATGGAGAGTGGAAGATTGATCATACCTACCTATGCCTATTATATCCACTTCAAATGCttctccttccccttccccttcacgGTACAGCCTCATGCTCTCTCAATATACAGTGACGACTTCGGTCAGACATGGCAAATGGGCAGGATGCTTCAAAGAAAGTCCTGTGAGTGTGAGATGGCAGAGATCATAGACCACGAGGGCAGGAGTCACCTGTACTGCAACGCCCGCCATGGAGGACATAGAGTGGAGGCTCTGAGTGAGAGCAGTGGGGTTTACTATGACAAGCCTCGCTTGGCTCCGAGGTTAGTGGAGCCAGGCCATGGTGGTTGCCAAGGTAGTGTGATTGGCTTccctgcccctgagcaaggtGAAGAGGGCATGGGTGGTACCACATCATCACCACGGGCCTCAGACACGCAAACCTGGCTTCTCTTCACCCACCCGACCAATAAGAGGACGAGGAAAGACTTGGGAGTGTATTTGAACCGTTCCCCACTGCACACGTCAGGTTGGGACCGGCCCTGGATCGTCCACAGTGGACCCAGTGGTTACTCAGACCTGGCCTACAGTGAGGACACTGAGCACTTTGCTTGCCTGATGGAATGTGGGGAGAAGAGTGAGATTGAACAGATTGCTTTTGTGTCTTTTCCACTCAGTGATGTCATGCAGACCATTGATGAGAAAGAAAAGACCTTCTAGGTTTTCGTTAGGGTTGTATTTCAGAAATACACTCTAACTCCAATCAGATTCAGTGGTCAGTAGATGCATTATCATCCCTATACTTTATTAGTATAGAAAAATAAGCAATCTGAAAAGAATATGATCATTTATAACAAAGTCGTTTTGTGTAGAAAAGGCAACTTACACTAAAATGTAATTGAAATGCAATCATAGTTAAATGTGATGTAATCTGTAGATGTGATCATTTTATGAAGTCGGACTATGAACTGCAATGCATGCTGTCATGGGACGACAGTCTATTTAAACAGCATACGTTTGTTACTTAGTTCTGCAATGTAACTCTTTTCACCTCTACATTGATTCAAAGGATTCAGTTCCTCATGCTTGTCAAGCACACTGTGAAGAGAACAACCTGCTCAGCCACAACTCTGCTCCCTGTTGAATGAACAGACATCCCTCGATCATGAAGTTGTTTGTTATCTACTGTGACTCATCTGTTCAAACTGCATGGGCTTCCCAATGCCACACTATCCAACCCTGTCTTTATGCACATTGTATCCCTGTCTGGACAGTTCAAACATTCCCCATAGCATTATAAATGTTATGACTATGTCATTTGTGAATGTTATTGATGTAATTTATGCTGTTGTTCAGACCCTCTGTAATGACAGTGAGCCACTCTGAAAAGTGTCTGCTAAAGGACAGATCAGCTTCATTTGCTGAGAACTCCAATGTGCCAAATTAGATTATTTTTCCCTGTCTCTAAGTAATGCTACAATATTAGTCCTGTCTCAACTATCTGCACAATCCTGTCCCTGCCTGTATCCTTGGCTATGCAGAAAACATATTGTTAATCATTTATGTGAATGGCATGCAGAACTATCTtttgaaaataaatgtaaaaaatctgaTAAACTATGTTTAGCTTTTTGATTTACAAAGTGTTGTGAGCAAACAATGTGGTGCAACTGCCTTCCACCTTTATCTCCAGGCCAGGGTTGAACTTATTTAGCAGGTACATGAAGAAATCAGTTTACTTATTAACATGTTATTATCAATTATGTAACAAAAGTGAACAATCTTGCTTTCTtataaaatacagtgcattcggaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486244 lncRNA upstream 7247 31671515 ~ 31671824 (+) True G2175265
TU2486243 lncRNA upstream 9125 31669301 ~ 31669946 (+) True G2175264
TU2486213 lncRNA upstream 34109 31641604 ~ 31644962 (+) False G2175240
TU2486217 lncRNA upstream 34164 31641604 ~ 31644907 (+) True G2175240
TU2486173 lncRNA upstream 86898 31584796 ~ 31592173 (+) True G2175213
TU2486265 lncRNA downstream 25946 31708065 ~ 31708276 (+) True G2175281
TU2486266 lncRNA downstream 26414 31708533 ~ 31708759 (+) True G2175282
TU2486305 lncRNA downstream 123922 31806041 ~ 31806768 (+) True G2175314
TU2486307 lncRNA downstream 129424 31811543 ~ 31811774 (+) True G2175316
TU2486309 lncRNA downstream 130700 31812819 ~ 31813213 (+) True G2175318
XM_036968036.1 mRNA upstream 19351 31653477 ~ 31659720 (+) False chrdl2
XM_021591308.2 mRNA upstream 19351 31653478 ~ 31659720 (+) True chrdl2
XM_021591307.2 mRNA upstream 26861 31646573 ~ 31652210 (+) True spag7
XM_021591304.2 mRNA upstream 38794 31622705 ~ 31640277 (+) False LOC110510029
XM_021591306.2 mRNA upstream 38794 31622706 ~ 31640277 (+) True LOC110510029
XM_021591313.2 mRNA downstream 8027 31690146 ~ 31701571 (+) True st14b
XM_036967831.1 mRNA downstream 19579 31701698 ~ 31723025 (+) False LOC110509421
XM_036967832.1 mRNA downstream 19579 31701698 ~ 31723025 (+) False LOC110509421
XM_036967833.1 mRNA downstream 19579 31701698 ~ 31723025 (+) False LOC110509421
XM_036967834.1 mRNA downstream 19579 31701698 ~ 31723025 (+) False LOC110509421
TU2486199 other upstream 67602 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 360694 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 854927 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1210947 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 1338380 30336852 ~ 30340691 (+) False G2173761
TU2486351 other downstream 218862 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 354928 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 439651 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1540698 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1540698 33222817 ~ 33235535 (+) True cxxc5a

Expression Profile