RNA id: XM_036967834.1


Basic Information

Item Value
RNA id XM_036967834.1
length 4875
RNA type mRNA
GC content 0.53
exon number 26
gene id LOC110509421
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31701698 ~ 31723025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTATTGGTACGTCGTTGTTATGATTCCCCTCTCAGTTTTTTTATCCGATGTCCAGTGTGCTCTATTTTCTGGTAAACTAGattGTGAAGGAAGATCAGAATGGATGCACTTGATCACATGCTGACCGACCCCCTAGACTCAGGGGAGGGCAGTGATGGGCGCATCACTGAAGAGTGCATGTTGGGAAACTGTCAAGTGAGTCTTCCAGAAGACCTGCTTGAGGACCCTGAAATATTCTTCTCTGTGCTGAGTGAAAGCACCTGGTCTGAAGTACTGACAGATGACCAGAGGCAGCATCTCCGTCAACTGTTACCACACTTTCAAGAAGACAACACTTGTGAGCAGGACAGCACCATCAGCAAACTCTTCAACAAACAGAACTTCTGCTTCGGAAACCCCTTGCACCTTGCACAGAAACTGTTCCAAGATGGCCATTTCAATCCAGAAGTGGTTAAGTACAGACAACTGTGTGCCAAGTCCCAGAAAAAACGCCAGCTGAACTCGTTGCAGCAGTACTACCACAAACTCCTTAAACAGATCCTGGTCTCTAGAAAgGAACTGCTAGAGTTGGCTGTCCGCAGTGGCCCTGACATTGCGGTGAACAGAAAGTATCCCACCCAGACCCATGGTGAGGTGCAGGAACAGAGGGTCAGAGGAAGAGTGTGCCGGATACTGAGGGAAGTTAAAACTGAGTGTGGAGACAGCAATGCCTCATCTGACGATGATGATACAGCCTCTTGGCTGCCAACACCTCAATCTCCTTCCTCTCCAACACCCACAGTCTCTGTCAGGGTTTTGCCCAGTCTCTCCACCCAGGACATGAAGACCACCGATAAGCAAGAACTGGGAGAGAAGGACATGAGAGCCATGCTACGGAGacatagagagaagaggagacgacAACCGGATCATCCAGACTTAATGACTTCTGACATCCGTCTGGGTGACATGATGTCTAGAGTGAACATAGGTCGTAAAGGCTCCATGATGACACTGTTTGACCTGGCTCTGCCCAAGAggaagatgagggaggagaggagaaagaagaagatgAGGACAATTAAAGTGGAGTCTGAGGATCCCTGTGAGGCTCTGATGCCTTTAGAAGCCCCAGCTCCATCAGTTAACATCACAGCTGCTCTGCCTGAGACCCCAGTCACTCCACTGCCCAGTGTCAAGGAAGAGCCGATGGAGGAGGTGCAGAACAGCCCTGTCATGGTGGAGGAGATCGCAGTGAGCTTCTTCAACCTGCTGGAGAACATCCTAAAACTAGACGGCCTCGCCAGCACCACCATGTTGGAGGAGAAGGTCCAACAGTGGCAGACATCTCCAGCTAGTTCCCTGAACCCCTGGTTCTCCTCGGCCTCCTGCTGGTCAGAGATGGTGCTGCCGGCCCTGCACTTCCTGGCTGGGGAGACTAAAGtcgGTATGTTGGTTCTTCCCAGTGGCTTCACTCCCTATGTTGCGTTCAGGGAAAACTCACAGCGATGGAAATGGATTGGTCCCAGtcaggatggagagaaggattTGAGTGCTCTGTGTCAGCTGTGGGTCGACTCCAAGGACTTGGTTGTGGTCAAGACAGAATGTGAAGAACTAACAGAGATGACTTCTCCCACCCCTAGAGTCAGTTGGACTGACTTCGTGGTGCGGCCCAGCACAGGAGACGAGAGGCATGTTTTCCAAGTGCAGGAGCAGCAGCGGTATGACCAGCCACACAAAGCCTTCACCTTCAGAATGCATGGCTTTGAGTCTGTGGTGGGGCCTGTTAAGGGGGTCTTTGACAAGGAGATGTCTCTCAACAAAGCCAGAGAACACACTCTGCTGCGCTCCGACCGCCCAGCTTATGTCACCATCCTCTCCTTGGtGCGGGACGCAGCAGCTCGGCTGCCCAACGGAGAGGGGACCAGAGCTgagatctgtgagctgctcaagGACTCTCAATTCCTGGCACCAGATGTCACCAGTGCTCAGGTGAACACGGTTGTGAGTGGGGCTCTGGACAGGCTGCACTATGAGAAGGACCCCTGTGTAAAGTATGACATCGGCCGCAAGCTGTGGATCTACCTGCACCGCGACCGCGGCCAGGAGGAGTTTGAGAGGATTCACCAGGCTCAAGCTGCTGCTGCCAAGGCCAGAAAGGCTCTGCAGCAGAAACCTAAACCTGCGTCTAAGCCTTCTGGAAGTAAGGAGGGGGGTGGTAAGACCCCTGGAGGCCTGGAAGCAAGTGATGTGGGGGGTCCCATGTCCCCAACTCCGACCACCCCCACTACCAGCACGCCTGGAACCCCCAAATCACCCCTCGCCCCTGTAGCCACAACCCCCACCAAAGCTGGGATCCCAGATTCAGTCAAGACCAGTCCTGGTGTTCTATTGGTGTCTCCTCCCCCCATGCCCCAGCTGGGGACCCTGTTGTCCAGCAGCCAGTCTGGCCCCCAGGTCTCTCAGCCAGCTACCTCCCAACACACAGCCAGGATAGTGGGCCACCAGTCAGGCACTCTCCCACAGGTACGAGTGGTTTCTTCCCAGACAGCAGGAGGACAGCATGCCACACTGGTGCACCAAACCCCTCATCAAATCAGAGTGCCAGTCACCATGGGAACCAAGGGCATCACACAGGCTGTGGTGTCATTACCACTGAGGACCCAGTCTGCTGGTAGCCCCATCCAGGTGCAGGCATCCAGAGGGCAGACAACCCTGTCAGTGTCAGGCCTGACCACTGCTGTTACTGTACTCAAACCTCAGACTGCATCCCCTGGCAGCCCAGCACACAACCCTACCTCCCCCGCTGTCCGACAGGGAGTCACCAGCCAGAACATCATCAAACAGGTGGCTATCACAGGCCAGTTGGGCATAAAGTCTCAAGGTAGACCGGGTCTTCCAATAACGACTACCAATCTTCGCATCCAGGGCAAGGATGTGCTCCGCCTgcccccctcctccatcaccaCAGACTCTAAAGGACAGACGGTGCTGCGGATCACTCCTGACATGATGGCCACCCTAACTAAGTCCCCTCTCACCACCGTCAAACTCACCCCCGACATCTTAGGCACTGCCACTACCAAGAGCATATCTGCTACTCTCCATGTAGCCCCACCCCACTCCACCTCCAGCCCAGCCTCCTCCTCGGGTGAAGTCCGGACCAGCAAGGCCTCTGCTGGCACCACCACCCTGTTGAAGGCTGCAGGGGACACTATCCGCCTGATGCCCACCCTAGCAGTCACTATGGCCGAGCAGAAGACCAGAACCTTCTCCACCGTCTCCTCGTCTGACTCGAAGAGTGGCACCACCATACGGATCATGCCCGGCCTCGGGGTCATCCCACAGAAACAGGGCCAAaccatcaccatgacaaccacCACTGGCAGCAAACCAGTCTCCACTGGAGCCGCCACTGTCACCATAGCCACCAGCGGACTGGCCGGAGCTAAAGGGGTGACGGTGGGCTCTTCTGCCTCAGGCTCCCTGACTCTGGGAACAGCCACAGCTACTGTCCGCCAGGTCCCCGTCACAGCCACAGTGGTGTCCACACAACCAGGGAAGTTACCAGCTCGGTTCAcagtgcctctgtctgtcctcagCCAACCACTGAAAAGTAAGAGTGTGATGACCACGCCCATACTGAAAGGAAACCTCAGTACCAATATCAGCAGTCTCGGCAGGAACATCATCCTCACCACCATGCCTGCCGGTACCAAGCTGATAGCTGGGAACAAGCCAGTCAGCTTTGTCACAGCTCAACAGTTACAGCAGCTGCAGCAGCAGGGACAGGCCACACAGGTGCGGATCCAGACGGTGCCAGCCCAGCAGCTCCAGCAGCGCTCTGCAGCAGGCTCCCCCAAGTCAATGTCCACTGTCGTAGTCACCACCGCACCCTCACCCAAACGGGCCCCGGACCCGCCACCACCAGCCCAGTGACGCGTATTCCCTAAGCCAGCTGCTGCTCTGTGCAGTGCCACCGCTCCAGAGGCAGGTGATGCTGAGGAGCCATAGCCCAACTCTGCTCTCTCAATGTTTAGGACGGATGTCTGGAGATGAACACAGGAGTAATCTGGCAGCAGATGAACATAGGAGAAATCCCAGGACAGCATGTCACTAGACCATTTATAGACAGTGGTTTCACCTGACATGTCTGCTGTGCAAGGCTAAGTTTCAGCAACACTACTGAAATAGCCTGCATTTAGGGAGTAAACGTTATTTATGataagggttacatggagaaaattgGACCACTTTGAAATGAAAATGtatggccctcccttcagcaaaatatatttgacctaaAAACCCTCCCTGAACACACAATAATAATAAACCTAAGTGGATAGCAGAGTACGTCTAGCGTTTAGCCTCACTTCTGGGACAGAGCCTTACATGTGCAGTTTTACAAACTGTTCTTCGTCctgtaagcattacatggcaacAAATGACTTTTGAGAGCGCACATGGCTGAGGCTagaaggttgtgggttcgcaGACCAATGTGAACCAGAGTAGTGGTAGAAAGATCTCctttatagtaaaagcattgcaTGAATCTATTATCATGTCATGCAGTTCTACGTAATTTTACatattcaaatatttttttaatgctGCACAAATTACCAAACgaagggacggagagagaggccTATCTGTTCATCTTGTCATATTTCTCTACTGTcaaatcagtgtgtcttgtttgcaacaaCACTGgccctgtttgcaaataattaaatCTGAGATGTCATTATGAATCTGAAcatggtactttcaaaagttaggcctaccttttccaccccagacagagtaggcctaactttccaccccagacagagtaggcctacctttccaccccagacagagtaggcctaccttttccaccccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486244 lncRNA upstream 29874 31671515 ~ 31671824 (+) True G2175265
TU2486243 lncRNA upstream 31752 31669301 ~ 31669946 (+) True G2175264
TU2486213 lncRNA upstream 56736 31641604 ~ 31644962 (+) False G2175240
TU2486217 lncRNA upstream 56791 31641604 ~ 31644907 (+) True G2175240
TU2486173 lncRNA upstream 109525 31584796 ~ 31592173 (+) True G2175213
TU2486305 lncRNA downstream 83016 31806041 ~ 31806768 (+) True G2175314
TU2486307 lncRNA downstream 88518 31811543 ~ 31811774 (+) True G2175316
TU2486309 lncRNA downstream 89794 31812819 ~ 31813213 (+) True G2175318
TU2486319 lncRNA downstream 110337 31833362 ~ 31833571 (+) True G2175327
TU2486320 lncRNA downstream 110906 31833931 ~ 31834164 (+) False LOC110509422
XM_021591313.2 mRNA upstream 127 31690146 ~ 31701571 (+) True st14b
XM_021591311.2 mRNA upstream 19579 31679071 ~ 31682119 (+) False neu3.1
XM_036967837.1 mRNA upstream 19579 31679071 ~ 31682119 (+) False neu3.1
XM_021591310.2 mRNA upstream 19579 31679072 ~ 31682119 (+) True neu3.1
XM_021591308.2 mRNA upstream 41978 31653478 ~ 31659720 (+) True chrdl2
XM_021591320.2 mRNA downstream 38264 31761289 ~ 31771774 (+) False napaa
XM_036967188.1 mRNA downstream 38264 31761289 ~ 31771774 (+) True napaa
XM_021591325.2 mRNA downstream 66807 31789832 ~ 31799471 (+) True hnrnpul1l
XM_021591326.2 mRNA downstream 76830 31799855 ~ 31804031 (+) True im:7138535
XM_021591327.2 mRNA downstream 91636 31814661 ~ 31820238 (+) False LOC110510048
TU2486199 other upstream 90229 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 383321 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 877554 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 1233574 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 1361007 30336852 ~ 30340691 (+) False G2173761
TU2486351 other downstream 177956 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 314022 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 398745 32121770 ~ 32126078 (+) True LOC110509425
TU2487963 other downstream 1499792 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1499792 33222817 ~ 33235535 (+) True cxxc5a

Expression Profile