G2175310


Basic Information

Item Value
gene id G2175310
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31841862 ~ 31845680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2486301
gcgtttattctcgagagtactgaacatgatacaatttacaacaggttataaactgaaaatgacgtcattaggttTCAAACTGTCCCGTCCCTCCTCCACTCTGgtacaatggcagtatagttctcaagccttcctacATAGACCCCCCACCTGTATAGATAATTTATGACCAGGCCAAAGCctccctgtgtagataagcattctagccagtctgacgacACTTTAATACATgtcatgatttgatttgattttgttctCTCAAGGTTTTATATATCTTGAACCTGAATTATTCGTAGTGGTCCTTTACCCTGGATGATTACACTAGGAATGTCCGTTGTGTTAGGGAGATTGATTGAACTCCGGCCGACCATAGTCTCCTTACCAACTCTAACCTCTGCCACCTGGAACGGTACCATAGTATCAGTTGAAAACTGGTCAAAGCCAACCCGAGATCCTGGGTCTTTATCGTTTTAATGTTAATTCGTACCTTTATACCATACTTCCTCTGCTCGGGAACACAGTCAGAAACTCCAACCCTTACTATACTTCATCTGGTCCCAAATTGGGTGTATGGGTTTACATAGCCGTCCCTTTCAGTTTGAGCTATGGCCCGACTCCATGAATTACACTGTGATTTACACAAATACCTTCCATAGAGACCCATGGTTCTAGACTGCCCATAGTGAATGACCCCAGTTGGTCTACATGAAACTCCACTGAGACATCCTTCCCAATCTCACTCTCCCTTCCTTACTATTCAGTTCCAGTGACCTGCTAAGATGCTATGGTAATATCACATTCTCCCCATCTAGCACGAGTCAAGTTACCCTCTTTGGCCTTCTCGGGGTTCATGGTGTATCAGGAATATGGCTCCCACGATCAGACAGCTCACAACGAATCAGTACACCTGTAAAACCCCACCCTTTCCCAGAAAACACATCAGCAGCCAGATGCAAGACACACCTCCACTTTTATGAACAAACACAGGGATGGAATGACAGGAAAGGAAGTCTTCGTTCGAGAGATGGCCCCCggaattctgttaattccagttctcctctcgaacactgtGATTGTTCGACAGTGTCAGTGTGTCTTACCCTCCCGCAGTGTGTGATATGAATTCAGGTAATTATTTTAGCTATTCTCAGGGTGAAggctgtcaccaggagtccttggTATGACCCCTTCCAACGGGCTGCTTCCTGTCTATTCTCCTCGgggactggattgagtgaatCACCGACTCCTCtagttcacctgtaatgcataaaatcttggacatacaggtttggttaacaaacagtttctcatatgtTCTATGTGATTATATCTTTAACTTCTATATCTACTTGTTagctattttttaaaatgtattattagtTTATTATCCAATAGGCCACTAAGTGTCCTATCCTAGACCACAACTTACCCATCCCCCCTTTGATACCTGGCTAtgcccaggtaacaaccttgCCTACTCTAAAcaatgacttaggtaagattagtCAATTATCCTTATGTTCTGACATCATCATGTAGGAGCCCCTTTCATTCTCCACTTGTCCAATTCTCCCTTGGGCGTCCATTCAGATCTATCCTGTACCAATTCTCTGTCAAGTGTCTTATCTACTTTAAGAGGTATCTGTGTTCATTTCCTCTCTGCTCTCAAACCTTCAAGGTCTCAGCAGTGCGGGGAGGACTCCTCTGTCTGCCCTTTCCCCTATCTGTCTGTAACAACTATGTGTTGCTTCCAAATTTTAACTAAATGTCTTACTGATTGGCTTTATCTAaactcatggatttttttttttacaaaaacatgTCTATGGTGTCAATTTCTAAAGTCCTTATATTGGTTAATTAAGGTTCTCGATCCTATCCCTAATCCTGAATCACCACAGTTGTCATATATCCCTGTCAAACTTTAATactatttaaataaaaatattctaaTGATTAATTAAAGCCACAATGAATGCTAACCATATATCTCTTTCCTGTATTAAAAAATAACATGGGTTAAACTTAGAAATCAGTCACAATTTAACATATGTTGCATAGTTTGAGATACCTTATCTACCGTAATTTACCATCCCTAAGAACTGCAACTTATTTATATTCATAAATAATTTGAATGCTTATAAAATCACCTTTTCTATCATATATTTTCCTGCCCTATTGGCTTAAATTGTGTCCTGTCCAAACCTCAAAAGACCATCCTCCCCCATTTATTATCGATGATTAATATAATTTCTGTTCCTGTTGTAGTACTAAATCAATAGTAGCCCATTTGAACCCTTCACAGCCAATGTTTAAAACAGAACCCTGAACCTGGCCTTCTTCCTCACTAGAGTTTGTTCCTCCGCTCCCCATAATTTGTCCTGCCTCAAttccttttttccctctgtgGTTCAAAACTAATAATTGTGGTTCTGAACTAATAATTATGTCCAAGAGCTATAAACTCCattataattaatttaccttaaaaACCAGTACCACCCATGACCACAAATTAATTATTCAAATGGCTCCCCCCTGTGGCTGATCAGACCACCTGGGAAAGCCCTGAAAACAGGTCAAAGgatacaccacactttacattcGTGTTCCATACCATATTAGACATATTAAAGAACGCTTTATCTTAAAAAATGTACTTGTCTAATTAATACTCAGAAAATAAAACTCCTAAAATTCcatatgtgagtgtacccctttaagatatcttGTCTCTGGGAACATGGAAATCCCCTTAACCCAAATGTTTACTACAAAAACAACACCTAATAATTATGATAATAGCCTCAAATCATTCGTTTTAAATTTTCTtaatgtttcatgtaactcattcaGTCTTTCTCCAAATTGTCTCCCCAAAATACTTTAAACCCTGCCATTACACTCACACAACTGTGATAaacgtgcactgtccctttaaaatAAAACACATTCAGACAGCCATACCATATTGTAGACCTTTCATTGTTCCCCGTAATGAAAACAGATCATGTTTAGAATACGTTAACTTGTTGTTCGAATTCACTGGCGTTACCTAACCAAAAATCAATACCCGGGAAACAACCACAACTTTTTACAATTCAACTATTCTTACCTACCTATCTTATAGCCAAATATAGCCCAATGAAACGAAACGCCTAGCAATTGTGTTGCTAGCTGTAGCATCTTTTCAGACTATCCTGACGATATGCAgctactttttaaaaatgtatttggaacttttagccacttttgaaaagtgactcaaagCTATAATGCTcgcattttccctctaaatgacacaaCCCATTTTCTCTTGTCATAATTTGAGGAACGTTATTGTGTATTCAACGTAATGACGCAGCAAGTCAGCCTGCCTCTTGTCAAATATATATCCCCTATTCAGATTTAGTTCTGCTTTAAATTCTATCGAAAAAGTAAAACCAACCGAACTTCCCAACTTTCTATACCCCAAAATTGAAACGTACCATGTTCTTTGCTAAATTTATTTCGTATGTCAGTCGATTCATAAAACAATATAACATCCTGATGGCACAAAACTTTATCGTATCTCTCCGTTATTCCTTAGAATTCATCAGGTTTAGGTAACTTTCTCTTCtatgatacatttatttaaatacgACTGCTGTCTTAATATTTTATTCTAGCAGATCATTTTGGGCAACATCGAAATTGCATCGCCATTATTTTGAATGAATTATTCTCTCAATTCAACCTAAACAACCTATTAAAAACGTTCAGTTCATATCTTATACAAACACTAGCGACCGTCGTCTTTGTCTGAGTCAGACTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2486301 True 3819 lncRNA 0.38 1 31841862 31845680

Neighbor

gene id symbol gene type direction distance location
LOC110510048 LOC106563405 coding upstream 21624 31814661 ~ 31820238 (+)
im:7138535 LOC106563406 coding upstream 37831 31799855 ~ 31804031 (+)
hnrnpul1l hnrl1 coding upstream 42391 31789832 ~ 31799471 (+)
napaa napa coding upstream 70088 31761289 ~ 31771774 (+)
LOC110509421 LOC106563415 coding upstream 118837 31701698 ~ 31723025 (+)
LOC110510049 LOC106563630 coding downstream 78542 31924222 ~ 31927459 (+)
LOC110510050 LOC106563631 coding downstream 83490 31929170 ~ 31930830 (+)
LOC100136774 tgf coding downstream 86121 31931801 ~ 31936995 (+)
LOC110510052 spsy coding downstream 97925 31943605 ~ 31992800 (+)
LOC110510053 LOC106563566 coding downstream 157498 32003178 ~ 32021463 (+)
G2175330 NA non-coding upstream 2870 31838787 ~ 31838992 (+)
G2175329 NA non-coding upstream 3294 31838302 ~ 31838568 (+)
G2175327 NA non-coding upstream 8291 31833362 ~ 31833571 (+)
G2175318 NA non-coding upstream 28649 31812819 ~ 31813213 (+)
G2175316 NA non-coding upstream 30088 31811543 ~ 31811774 (+)
G2175354 NA non-coding downstream 42495 31888175 ~ 31888375 (+)
G2175361 NA non-coding downstream 52045 31897725 ~ 31897994 (+)
G2175362 NA non-coding downstream 53463 31899143 ~ 31899390 (+)
G2175372 cbr1 non-coding downstream 97069 31942749 ~ 31957403 (+)
G2175233 psmb6 other upstream 230393 31610544 ~ 31611469 (+)
G2174785 NA other upstream 523485 31317837 ~ 31318377 (+)
LOC110510022 LOC106563433 other upstream 1017718 30817845 ~ 30824144 (+)
G2173841 LOC106563447 other upstream 1373738 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 1501171 30336852 ~ 30355090 (+)
LOC110509422 LOC106563560 other downstream 55301 31820484 ~ 31908546 (+)
G2175413 NA other downstream 191367 32037047 ~ 32037736 (+)
LOC110509425 LOC106563572 other downstream 276090 32115629 ~ 32150579 (+)
cxxc5a LOC106563628 other downstream 1377137 33212994 ~ 33235535 (+)
LOC110510125 LOC106563697 other downstream 2285331 34105921 ~ 34135553 (+)

Expression


Co-expression Network