XLOC_004309 (ap5b1)


Basic Information

Item Value
gene id XLOC_004309
gene name ap5b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39112341 ~ 39118929 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008211
CCTGGTTTATCATATGACAACTAGGAACACATGATCTTCAGAGACGTCAACAGACGGATGTTTAAATCCATttgctttatttatgtttttacggTGTGAACTGACAGAATGACTATCGCGGATCTCTGGGATCAGAGAATTTCTGCCTTTCTGCTGAGTCCATCTCAGTTTTTGGCCACCAGCACCTCTGAGATTTTCCTGGCTGAACTCCTACACGAACTGCGGAATGATAAAATCAATGATCAACTTAAGATACTCCTTGTGTCTGCACTACTGGAGCATCCAACCATTCTCTGCCCCTCTGCCTCAGTGGGAGAAGAAACGGCTCTCGAACTGCTGTCCATCTTTTCCCAGACACCGCAGAAGTCCATCAGCCTCAAGTGTAATGTCATGCTGGCGATCACCAATGTGATAATATGCACTTCCTGTTTGGCCACGCACACAAAGATGGCTGAAGACTGGCTGGACCTTTTATTTCAGACGATTCAGGACACCAATGACTACAGATGCGGTCAATCCCAGCAGCCTTTAAGAGCCACTGCTTGTGACTGCCTACGAGAAATGGAAACCTGTAGCCCCGGTCTTCTTTCTCAAAAGTTGGAGGCCTTGTATCTTCTCAAACAGCAAGAAACTTCAGTTCTGCATCAGTCCTATTGTATTCTGTATACACTAGGATTGAAGAACGCAATACGGATCTTGACGAACCAAAAAGAGGTTACTGATTTCGAGTTTAAGAGCATATTAGGAGGAAATGAAGGGTTTGCATGGAGAACTAATCAGAATTTCTTGCCAATTAACATGATAGTGCAAGTCCCACAGTTGCCACAAGGACTGGATTGTAAAGAACTCAAATCGATAATGTCTTTACTTCTGGAGGAGTCCTACCTACTAACACCAATTTCCCAGTCTTCCCTAATGAGGGATCTTGTAGAAGTTGTTGCAATGGTGCCTGGACTTTCTCCAACACTATTTAAATCGCAGCTTCTGCGACTGTTTGGCACAGCAGAAGTCGTGCTCATGCATGCCACGCTCTTCATGAAAGACACCTTCACAGATAGTCTTTTCACCGCTGAGGATGAGAACTTTCTGCTTAAGCGTCTGGTGGGATCAGCCCAGCATCCGCTCCTAAGAATTCCCGAAAAACTCTTCTACATGGACTGCATCCTGCATTTCCCTGAAAACCGACCTATATCTAGTAGTGGTGAAGAATGTTTACCTGTGCTGGTTACGCCACGTCTTGCAGCATCTCTTCTCCCTACGGTTTTCAATGATAGTGCTACTATGCTCTGCAGACTGAACCTTCTGTGCCTGGTgcaccttgaggcagatgagggTGAAGCGGATAAAGGAATCGCCTACCTGTTCGATCACATAATGGCACTTTTGAAAATCGTAGACAGCGATGGTAGCAGAGAAGTAGTCGTGACGTCTTTCAgggcattgtttatttttctcaagCACTTCAATGGTATGGAAGAACTCTCGGAGAAGCTGATCGACAAATTACGTGATATTTATTCCAGACATTGCAGACTTGCTCCAAATCTAATTGGCCTTGCAGATCGAATTCAAGAGTGTCTAGACGACCCCATCTGGTCGGTTAAGTTGTTGAGAGGACTTCAGAAATGCATTATGGAGATGCCTCCATTGCAATTGACGATTCACAATTTGAGTTGGCACTTGAAAGTCTTGAAAAGAGTGGCTAAAGAGGGTCAGATCACCCAAAGGAACACCATTTACCTTCTTCTCAACGTTCTCATCAACTCTAACTTGTGTGAACGAGGCAAGTGGCAGATTGGAAACGCAGTTCTTGCTGTTTGTCGCAATCTTTTGGAGCACCCTTCGATTGATCAGGTGTTCATCGAGTTGGCAGATCTTTTGCAATACATTTCAGTTAATTACAATGACACGGACATCAAGGACCACGCTCGCTTCTACTACACATTGCTAACCAATCTTTCATGGGAAAAGCTGACAGGGGTTCTTGCCAAAGGTCCTGATGGAGGACGTGCCAAAGAGCGCTCGCATTCAGCAATTATGGCTGAGAGCGAAGGGATTGCGAGTAACCTGACTGTGTGCAAAACTGAACGGCATGTTTTGCAACTCATTAAAATCCAAGATAAAGTCTCGCAAAGCACTTCAGAGAGTTCTGAATCATTGGAGGATACAGGAGAGGCTAGGAACTGGTTGGAGGTTTATCAAGAACAATTCCAGACACCTGGTTTTGGTTCGGAGGTCACTTTAAGGTACAACCTGACTCATGCAGAAGAAACCGATCCTTTATTCGATAGAGTCTTTTCAATCTGTCTGCATTTTGAGTTTAAAGATTCAAACTACGCAAAGGTGAGTGACATACATGTACCATGTGTGTTTAGAGACCGAAAGCCTCCTGAAGtcaatgtccagcttaaaccatttCAACCCTATCCAACTACTCTATGCTTCAGTGCAATGTTTACCACCCAAGATGGACGCTCATGGCACAGCCAACTGCCTGACGTGAGCATTTCATTCCCAGAGATATTCCTACCTCTACCTATAGCTACAAACGCATCAAGTGCATGCAGAGAGCAAGTGTTTGATCACATCTGGGAGTCTGCAGCCTCTGGGAATCCTGACAAATCCGCCATTAGTTTGTTCTGTTTTAAACCCGGAGATGAAAGTCTAGCCGATCTGATCAAGACACATTTTCAGGGTTACCTGATTACAGATCAGCAAAGTGAACGATTTTGGAAAGTCTTGTTCTTTCTTCCACCGATGTGCCATGTGCTTTTGAGAATTACACAGGCTGAAGATGCCGTTCAGGTCAGCATCGCAACGGACAATTGGGAGCTATTACCGTTTGTGAACTCTTACCTCCGAAACATTACTGATGATTGTAGCACAACAGTAACAGATGGCTAAATGGATACTTCGCAGTTTACACCGATGATTTTAAaccaattaaatatattttattagttcATTATTTTGATATAGCAAATTTCTTTTTGTATATTAAACCTTTCACTAACGTGTCTTTAAAAATGATATAGGTCCACATTATACTGTTTCGTGTGTAGGAAGCAGTGCTTTTTTACTGCTTTACCCAAAATCAAGGTactgaataaatgatttaatgaaatcCAAA
>TCONS_00008212
GGACATGACTCATtggtgacttttattttaaaacacacgGCTCACTACCTGGTTTATCATATGACAACTAGGAACACATGATCTTCAGAGACGTCAACAGACGGATGTTTAAATCCATttgctttatttatgtttttacggTGTGAACTGACAGGTGAGTCGTTGTTTTGTCAATGCGGGTGTgcgttaattaatacatttttaagcgCCATTGTCACGCACATACATAAGTGCTCCTGTTTAATCTGCAGAATGACTATCGCGGATCTCTGGGATCAGAGAATTTCTGCCTTTCTGCTGAGTCCATCTCAGTTTTTGGCCACCAGCACCTCTGAGATTTTCCTGGCTGAACTCCTACACGAACTGCGGAATGATAAAATCAATGATCAACTTAAGATACTCCTTGTGTCTGCACTACTGGAGCATCCAACCATTCTCTGCCCCTCTGCCTCAGTGGGAGAAGAAACGGCTCTCGAACTGCTGTCCATCTTTTCCCAGACACCGCAGAAGTCCATCAGCCTCAAGTGTAATGTCATGCTGGCGATCACCAATGTGATAATATGCACTTCCTGTTTGGCCACGCACACAAAGATGGCTGAAGACTGGCTGGACCTTTTATTTCAGACGATTCAGGACACCAATGACTACAGATGCGGTCAATCCCAGCAGCCTTTAAGAGCCACTGCTTGTGACTGCCTACGAGAAATGGAAACCTGTAGCCCCGGTCTTCTTTCTCAAAAGTTGGAGGCCTTGTATCTTCTCAAACAGCAAGAAACTTCAGTTCTGCATCAGTCCTATTGTATTCTGTATACACTAGGATTGAAGAACGCAATACGGATCTTGACGAACCAAAAAGAGGTTACTGATTTCGAGTTTAAGAGCATATTAGGAGGAAATGAAGGGTTTGCATGGAGAACTAATCAGAATTTCTTGCCAATTAACATGATAGTGCAAGTCCCACAGTTGCCACAAGGACTGGATTGTAAAGAACTCAAATCGATAATGTCTTTACTTCTGGAGGAGTCCTACCTACTAACACCAATTTCCCAGTCTTCCCTAATGAGGGATCTTGTAGAAGTTGTTGCAATGGTGCCTGGACTTTCTCCAACACTATTTAAATCGCAGCTTCTGCGACTGTTTGGCACAGCAGAAGTCGTGCTCATGCATGCCACGCTCTTCATGAAAGACACCTTCACAGATAGTCTTTTCACCGCTGAGGATGAGAACTTTCTGCTTAAGCGTCTGGTGGGATCAGCCCAGCATCCGCTCCTAAGAATTCCCGAAAAACTCTTCTACATGGACTGCATCCTGCATTTCCCTGAAAACCGACCTATATCTAGTAGTGGTGAAGAATGTTTACCTGTGCTGGTTACGCCACGTCTTGCAGCATCTCTTCTCCCTACGGTTTTCAATGATAGTGCTACTATGCTCTGCAGACTGAACCTTCTGTGCCTGGTgcaccttgaggcagatgagggTGAAGCGGATAAAGGAATCGCCTACCTGTTCGATCACATAATGGCACTTTTGAAAATCGTAGACAGCGATGGTAGCAGAGAAGTAGTCGTGACGTCTTTCAgggcattgtttatttttctcaagCACTTCAATGGTATGGAAGAACTCTCGGAGAAGCTGATCGACAAATTACGTGATATTTATTCCAGACATTGCAGACTTGCTCCAAATCTAATTGGCCTTGCAGATCGAATTCAAGAGTGTCTAGACGACCCCATCTGGTCGGTTAAGTTGTTGAGAGGACTTCAGAAATGCATTATGGAGATGCCTCCATTGCAATTGACGATTCACAATTTGAGTTGGCACTTGAAAGTCTTGAAAAGAGTGGCTAAAGAGGGTCAGATCACCCAAAGGAACACCATTTACCTTCTTCTCAACGTTCTCATCAACTCTAACTTGTGTGAACGAGGCAAGTGGCAGATTGGAAACGCAGTTCTTGCTGTTTGTCGCAATCTTTTGGAGCACCCTTCGATTGATCAGGTGTTCATCGAGTTGGCAGATCTTTTGCAATACATTTCAGTTAATTACAATGACACGGACATCAAGGACCACGCTCGCTTCTACTACACATTGCTAACCAATCTTTCATGGGAAAAGCTGACAGGGGTTCTTGCCAAAGGTCCTGATGGAGGACGTGCCAAAGAGCGCTCGCATTCAGCAATTATGGCTGAGAGCGAAGGGATTGCGAGTAACCTGACTGTGTGCAAAACTGAACGGCATGTTTTGCAACTCATTAAAATCCAAGATAAAGTCTCGCAAAGCACTTCAGAGAGTTCTGAATCATTGGAGGATACAGGAGAGGCTAGGAACTGGTTGGAGGTTTATCAAGAACAATTCCAGACACCTGGTTTTGGTTCGGAGGTCACTTTAAGGTACAACCTGACTCATGCAGAAGAAACCGATCCTTTATTCGATAGAGTCTTTTCAATCTGTCTGCATTTTGAGTTTAAAGATTCAAACTACGCAAAGGTGAGTGACATACATGTACCATGTGTGTTTAGAGACCGAAAGCCTCCTGAAGtcaatgtccagcttaaaccatttCAACCCTATCCAACTACTCTATGCTTCAGTGCAATGTTTACCACCCAAGATGGACGCTCATGGCACAGCCAACTGCCTGACGTGAGCATTTCATTCCCAGAGATATTCCTACCTCTACCTATAGCTACAAACGCATCAAGTGCATGCAGAGAGCAAGTGTTTGATCACATCTGGGAGTCTGCAGCCTCTGGGAATCCTGACAAATCCGCCATTAGTTTGTTCTGTTTTAAACCCGGAGATGAAAGTCTAGCCGATCTGATCAAGACACATTTTCAGGGTTACCTGATTACAGATCAGCAAAGTGAACGATTTTGGAAAGTCTTGTTCTTTCTTCCACCGATGTGCCATGTGCTTTTGAGAATTACACAGGCTGAAGATGCCGTTCAGGTCAGCATCGCAACGGACAATTGGGAGCTATTACCGTTTGTGAACTCTTACCTCCGAAACATTACTGATGATTGTAGCACAACAGTAACAGATGGCTAAATGGATACTTCGCAGTTTACACCGATGATTTTAAaccaattaaatatattttattagttcATTATTTTGATATAGCAAATTTCTTTTTGTATATTAAACCTTTCACTAACGTGTCTTTAAAAATGATATAGGTCCACATTATACTGTTTCGTGTGTAGGAAGCAGTGCTTTTTTACTGCTTTACCCAAAATCAAGGTactgaataaatgatttaatgaa

Function

symbol description
ap5b1 Predicted to be involved in endosomal transport. Predicted to act upstream of or within protein transport. Predicted to be part of AP-type membrane coat adaptor complex. Orthologous to human AP5B1 (adaptor related protein complex 5 subunit beta 1).

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0030119 AP-type membrane coat adaptor complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-131121-204 Predicted to be involved in endosomal transport. Predicted to act upstream of or within protein transport. Predicted to be part of AP-type membrane coat adaptor complex. Orthologous to human AP5B1 (adaptor related protein complex 5 subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000078805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008211 False 3130 mRNA 0.43 3 39112341 39118882
TCONS_00008212 True 3267 mRNA 0.43 2 39112348 39118929

Neighbor

gene id symbol gene type direction distance location
XLOC_004307 p3h1 coding downstream 7088 39075613 ~ 39105253 (-)
XLOC_004308 CU210919.2 coding downstream 22350 39089875 ~ 39089991 (-)
XLOC_004306 cldn19 coding downstream 67746 39013763 ~ 39044595 (-)
XLOC_004305 AL845324.2 coding downstream 162590 38947987 ~ 38949751 (-)
XLOC_004304 si:ch211-122l14.6 coding downstream 183581 38926724 ~ 38928760 (-)
XLOC_004310 wnt4 coding upstream 48917 39167846 ~ 39202915 (-)
XLOC_004311 NA coding upstream 89255 39208184 ~ 39212765 (-)
XLOC_004312 NA coding upstream 184668 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 coding upstream 518811 39637740 ~ 39645310 (-)
XLOC_004314 uts2b coding upstream 905253 40024182 ~ 40030139 (-)
XLOC_004063 CR854846.1 misc downstream 22984663 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 26420650 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 26490574 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 26521045 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 26599079 12512966 ~ 12513262 (-)
XLOC_004295 NA non-coding downstream 686538 38339439 ~ 38425803 (-)
XLOC_004294 NA non-coding downstream 913454 38149889 ~ 38198887 (-)
XLOC_004293 NA non-coding downstream 1025328 38084872 ~ 38087013 (-)
XLOC_004319 CT033813.1 non-coding upstream 1063752 40182681 ~ 40182796 (-)
XLOC_004323 NA non-coding upstream 1341922 40460851 ~ 40462487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_10551500_10554962 AP5B1 coding CI01000306 null 10551386 ~ 10555181 (-)