XLOC_004307 (p3h1)


Basic Information

Item Value
gene id XLOC_004307
gene name p3h1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39075613 ~ 39105253 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008209
AGAGACTTTAGGACAGTCTCCAAAACCGAGATCTACCTCCTCGCAGGCCTCCAGTAGTCTCCAAGATGTGGACCTCACTGTGCCTCATCTCAATCCTCTCCACTGTCCACTTCACCCGGTGTGACCCTCAAATCAATGCGGGATTTCAGCCGTACGACCTGCTCTTCGACAACGCGGTGGAGGCGTATTATAAGCAGGACTGGCTGGCTGTGATCCTCAACATGGAGAAAGCGCTGCGGAATAAAGGAGCGCTGCGTAAAATACAGACGCACTGTCGCCTGTCCTGCGCCAATAACACCGCTTTTGGGGAGCCTCTTCCCGGTTTGGGCATCCCGATCCCAGGCTCCGGCTCTGTGGAGGATTTAGCGTTTTTCCAGAGGATCCTCCAACGGGCCGATTGCGTGAATGCGTGTGAAAGCGAGAAACTGGGACCGGCGACCCTGCATAAAGTTAGTGAGAATGTTGAGCTGGAGTTTAAGAAGAGGACGCCGTATAATTACCTGCAAGTGGCCTACTTTAAGATAAACAAGCTTGACAAGGCAGTGGcagcagcaaatacatttttcatgGCGAACCCCGAGCATGTGGAGATGAAACAGAATTTAGATTATTACAGGATGATGGCTGGGGTGCAGGAGACCGATTTCAAGGACCTGGAGGAGAAACCGCACATGGCAGAATTTTTGCAAGGCAAGATTCATTACAGTACGGAAGATTTCGTTCCAGCCGTCGAGCATTTTGAGGCGGCGGTTGAAGAGTATTTCGGCGCTTATGAGGAATGCCGAGTTCTGTGTGAGGGAGCGTTCGATTATGATGGATACAACTACATGGAGTACAACGCTGATCTCTTCCAGTCAATGACAGATCATTATCTTCATGTTTTGAGCTGCAAACAAAACTGTGCCGTTGAGCTGGCATCCACCGCTGGGAGAGAAACACCTTTTGAAGATTTCCTGCCCTCACACTTCAACTACCTGCAGTTCTCATACTATAACATGGAGAAATTCGAGCAGGCCATTGAGTGTGCTAAAACATACCTGCTCTTCCACCCTGAGGATGCAGTCATGGCTCAGAACATTGCGTATTACTCCGCTGTGCTGGGAGACGAAAAAGCCGTCAACATCACGGAAAGAGAGGTGGTTAAACAGCATATAAAGAGATCTCTGCTGGAAAAAGAGCTCCTTTACTACGGCTATGAGATGTTTGGTAAAGCGTTTGTTGATCCAGACACATGGACACCTGAGGAAGTCATGCCCAAGAAACTAAGAGACAAACAGAAGGTGGACAAAGAAACAGCGGCGAGGATTACTGAGGAGATCGGTAACCTGATGAAAGAGATAGAGACACTGGTGGAAGAAAAGAGTAAAGAGTCATCAGACATCGTCAAGGTTGTGAAAGATGAAATCAAACCAGCTGCTGCTCCAGATACTGCCAGCAAACTCCCATCTGATGACATCACCATAACCATGACCTCCGAGGTTCTGAGCGGTTCACATCGAGTTGTCCTAGATGGAGTAACCACATCTGATGAGTGTCAGGAACTTCATCAAATCACCACTACAGCAGCTCTTCAAGATGCTTTTAAAGCAGTGCCATCCCCTCATTCAGCGAGTGAGATGTTTCAGGACGTCCCAGTTCTCAAAGCTCTGCAGGAAGGTCTAATTCCTACAAAAAGTGCACATTTGCTGTCCAATCTAGGTGAGAAGGTCCGTAAGGTTCTTGAATCCTACTTCGCTCTGGAATCAACGCTCTATTTCTCCAGCTCAAACCTGGTCTGCAGATCTGCCACTGAAAAACAGGAGGCCAGtgcagactgtctgcttattTCCGAGCTCAACGAATGTATCAAAGTGCTGTCAACAAACACCAATCAAGGCTACAGTGCCATTTTGTACCTCAATGATGATTTCGAAGGAGGAGATTTTATCTTCACCGAGTCGGATGGCAAAGCTGTCTCTGCCGCAGTGAAGCCTCAGTGTGGTCGAGTGGTGGGCTTCAGAGCCGGACAGGAGAATCTTCATGGGGTCTCAGCGGTAACTAAAGGCCAGAGGTGTGCTGTAGTGCTTCACTTCACTCTGGATCCTCAGCACAGTCAGGAGGAGCGTTCACAGACTGAAGAACTTCTGAAAAAGCTTTCGAGCCCAGTTAAAGTAGACATCCAGAAAACGGCGACAGACAGTCAAGAGTACCCCTCCAAACCCGAAGGAACAATTCCTGCCGAAACAACAGAGAAAGACAAAAGCAAAGCGACTGATGACAACACAGCtgagacaaaaacagacaataaaGCTAGCAAGAAAAGCGAAAAACcaaaggccaaaacaacaaaaaagacatcAAAAGCAGAAACCCAAACAAAAGCTAAAgcagacaaaacaaaaaccacaacagcggagaaaaagaaaacaaaaccagCCAGCAAGACAAAACCTGTAACGACAGACAAAAAGGAGAAACCGCCCGGCAAGAAAACAGCTGCAAATGACAAGAAAACCAAACCAAAAGCCACAGAAGCGAAAGACTCCAAAGCTGAAAAACACAACGATGAGTTATGAGCCTCATGCAGAagagatttgtttttcattttttgattttatttttatgtgatgGAGCAGTTCTgcaatttttgtacatttttgtttttaaagactcAAAGCCACAGGAGAATTATGGGTGACAATCAAGTTTGGCATTCTCAGGACATTTCGATTACAATTGCCACTTCCCATTCCCATAACaattcctgaataaaagtgatgtgtttttaaattaaa

Function

symbol description
p3h1 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in notochord; pectoral fin musculature; and splanchnocranium. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 8. Orthologous to human P3H1 (prolyl 3-hydroxylase 1).

GO:

id name namespace
GO:0032963 collagen metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0019797 procollagen-proline 3-dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-031010-35 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in notochord; pectoral fin musculature; and splanchnocranium. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 8. Orthologous to human P3H1 (prolyl 3-hydroxylase 1).

Ensembl:

ensembl_id ENSDARG00000071212

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008209 True 2774 mRNA 0.46 15 39075613 39105253

Neighbor

gene id symbol gene type direction distance location
XLOC_004306 cldn19 coding downstream 31018 39013763 ~ 39044595 (-)
XLOC_004305 AL845324.2 coding downstream 125862 38947987 ~ 38949751 (-)
XLOC_004304 si:ch211-122l14.6 coding downstream 146853 38926724 ~ 38928760 (-)
XLOC_004303 si:ch211-122l14.7 coding downstream 150669 38922744 ~ 38924944 (-)
XLOC_004302 si:ch211-122l14.4 coding downstream 161348 38912133 ~ 38914265 (-)
XLOC_004309 ap5b1 coding upstream 7088 39112341 ~ 39118929 (-)
XLOC_004310 wnt4 coding upstream 62593 39167846 ~ 39202915 (-)
XLOC_004311 NA coding upstream 102931 39208184 ~ 39212765 (-)
XLOC_004312 NA coding upstream 198344 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 coding upstream 532487 39637740 ~ 39645310 (-)
XLOC_004063 CR854846.1 misc downstream 22947935 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 26383922 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 26453846 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 26484317 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 26562351 12512966 ~ 12513262 (-)
XLOC_004295 NA non-coding downstream 649810 38339439 ~ 38425803 (-)
XLOC_004294 NA non-coding downstream 876726 38149889 ~ 38198887 (-)
XLOC_004293 NA non-coding downstream 988600 38084872 ~ 38087013 (-)
XLOC_004292 AL928854.1 non-coding downstream 1034191 38039964 ~ 38041422 (-)
XLOC_004319 CT033813.1 non-coding upstream 1077428 40182681 ~ 40182796 (-)
XLOC_004323 NA non-coding upstream 1355598 40460851 ~ 40462487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_10536444_10545622 NA coding CI01000306 null 10536136 ~ 10545622 (-)