RNA id: TCONS_00008209


Basic Information

Item Value
RNA id TCONS_00008209
length 2774
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_004307
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39075613 ~ 39105253 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGACTTTAGGACAGTCTCCAAAACCGAGATCTACCTCCTCGCAGGCCTCCAGTAGTCTCCAAGATGTGGACCTCACTGTGCCTCATCTCAATCCTCTCCACTGTCCACTTCACCCGGTGTGACCCTCAAATCAATGCGGGATTTCAGCCGTACGACCTGCTCTTCGACAACGCGGTGGAGGCGTATTATAAGCAGGACTGGCTGGCTGTGATCCTCAACATGGAGAAAGCGCTGCGGAATAAAGGAGCGCTGCGTAAAATACAGACGCACTGTCGCCTGTCCTGCGCCAATAACACCGCTTTTGGGGAGCCTCTTCCCGGTTTGGGCATCCCGATCCCAGGCTCCGGCTCTGTGGAGGATTTAGCGTTTTTCCAGAGGATCCTCCAACGGGCCGATTGCGTGAATGCGTGTGAAAGCGAGAAACTGGGACCGGCGACCCTGCATAAAGTTAGTGAGAATGTTGAGCTGGAGTTTAAGAAGAGGACGCCGTATAATTACCTGCAAGTGGCCTACTTTAAGATAAACAAGCTTGACAAGGCAGTGGcagcagcaaatacatttttcatgGCGAACCCCGAGCATGTGGAGATGAAACAGAATTTAGATTATTACAGGATGATGGCTGGGGTGCAGGAGACCGATTTCAAGGACCTGGAGGAGAAACCGCACATGGCAGAATTTTTGCAAGGCAAGATTCATTACAGTACGGAAGATTTCGTTCCAGCCGTCGAGCATTTTGAGGCGGCGGTTGAAGAGTATTTCGGCGCTTATGAGGAATGCCGAGTTCTGTGTGAGGGAGCGTTCGATTATGATGGATACAACTACATGGAGTACAACGCTGATCTCTTCCAGTCAATGACAGATCATTATCTTCATGTTTTGAGCTGCAAACAAAACTGTGCCGTTGAGCTGGCATCCACCGCTGGGAGAGAAACACCTTTTGAAGATTTCCTGCCCTCACACTTCAACTACCTGCAGTTCTCATACTATAACATGGAGAAATTCGAGCAGGCCATTGAGTGTGCTAAAACATACCTGCTCTTCCACCCTGAGGATGCAGTCATGGCTCAGAACATTGCGTATTACTCCGCTGTGCTGGGAGACGAAAAAGCCGTCAACATCACGGAAAGAGAGGTGGTTAAACAGCATATAAAGAGATCTCTGCTGGAAAAAGAGCTCCTTTACTACGGCTATGAGATGTTTGGTAAAGCGTTTGTTGATCCAGACACATGGACACCTGAGGAAGTCATGCCCAAGAAACTAAGAGACAAACAGAAGGTGGACAAAGAAACAGCGGCGAGGATTACTGAGGAGATCGGTAACCTGATGAAAGAGATAGAGACACTGGTGGAAGAAAAGAGTAAAGAGTCATCAGACATCGTCAAGGTTGTGAAAGATGAAATCAAACCAGCTGCTGCTCCAGATACTGCCAGCAAACTCCCATCTGATGACATCACCATAACCATGACCTCCGAGGTTCTGAGCGGTTCACATCGAGTTGTCCTAGATGGAGTAACCACATCTGATGAGTGTCAGGAACTTCATCAAATCACCACTACAGCAGCTCTTCAAGATGCTTTTAAAGCAGTGCCATCCCCTCATTCAGCGAGTGAGATGTTTCAGGACGTCCCAGTTCTCAAAGCTCTGCAGGAAGGTCTAATTCCTACAAAAAGTGCACATTTGCTGTCCAATCTAGGTGAGAAGGTCCGTAAGGTTCTTGAATCCTACTTCGCTCTGGAATCAACGCTCTATTTCTCCAGCTCAAACCTGGTCTGCAGATCTGCCACTGAAAAACAGGAGGCCAGtgcagactgtctgcttattTCCGAGCTCAACGAATGTATCAAAGTGCTGTCAACAAACACCAATCAAGGCTACAGTGCCATTTTGTACCTCAATGATGATTTCGAAGGAGGAGATTTTATCTTCACCGAGTCGGATGGCAAAGCTGTCTCTGCCGCAGTGAAGCCTCAGTGTGGTCGAGTGGTGGGCTTCAGAGCCGGACAGGAGAATCTTCATGGGGTCTCAGCGGTAACTAAAGGCCAGAGGTGTGCTGTAGTGCTTCACTTCACTCTGGATCCTCAGCACAGTCAGGAGGAGCGTTCACAGACTGAAGAACTTCTGAAAAAGCTTTCGAGCCCAGTTAAAGTAGACATCCAGAAAACGGCGACAGACAGTCAAGAGTACCCCTCCAAACCCGAAGGAACAATTCCTGCCGAAACAACAGAGAAAGACAAAAGCAAAGCGACTGATGACAACACAGCtgagacaaaaacagacaataaaGCTAGCAAGAAAAGCGAAAAACcaaaggccaaaacaacaaaaaagacatcAAAAGCAGAAACCCAAACAAAAGCTAAAgcagacaaaacaaaaaccacaacagcggagaaaaagaaaacaaaaccagCCAGCAAGACAAAACCTGTAACGACAGACAAAAAGGAGAAACCGCCCGGCAAGAAAACAGCTGCAAATGACAAGAAAACCAAACCAAAAGCCACAGAAGCGAAAGACTCCAAAGCTGAAAAACACAACGATGAGTTATGAGCCTCATGCAGAagagatttgtttttcattttttgattttatttttatgtgatgGAGCAGTTCTgcaatttttgtacatttttgtttttaaagactcAAAGCCACAGGAGAATTATGGGTGACAATCAAGTTTGGCATTCTCAGGACATTTCGATTACAATTGCCACTTCCCATTCCCATAACaattcctgaataaaagtgatgtgtttttaaattaaa

Function

GO:

id name namespace
GO:0032963 collagen metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0019797 procollagen-proline 3-dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-031010-35 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in notochord; pectoral fin musculature; and splanchnocranium. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 8. Orthologous to human P3H1 (prolyl 3-hydroxylase 1).

Ensembl:

ensembl_id ENSDART00000102827

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008196 lncRNA downstream 601260 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 649810 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008859 lncRNA downstream 876726 38149889 ~ 38198887 (-) False XLOC_004294
TCONS_00008858 lncRNA downstream 884505 38149889 ~ 38191108 (-) False XLOC_004294
TCONS_00008857 lncRNA downstream 884584 38149889 ~ 38191029 (-) False XLOC_004294
TCONS_00008489 lncRNA upstream 102931 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008861 lncRNA upstream 198344 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008214 lncRNA upstream 532487 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008862 lncRNA upstream 1355598 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 1532101 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008208 mRNA downstream 31018 39013763 ~ 39044595 (-) True XLOC_004306
TCONS_00008206 mRNA downstream 146853 38926724 ~ 38928760 (-) True XLOC_004304
TCONS_00008205 mRNA downstream 150669 38922744 ~ 38924944 (-) True XLOC_004303
TCONS_00008204 mRNA downstream 161348 38912133 ~ 38914265 (-) True XLOC_004302
TCONS_00008203 mRNA downstream 165086 38908406 ~ 38910527 (-) True XLOC_004301
TCONS_00008211 mRNA upstream 7088 39112341 ~ 39118882 (-) False XLOC_004309
TCONS_00008212 mRNA upstream 7095 39112348 ~ 39118929 (-) True XLOC_004309
TCONS_00008213 mRNA upstream 62593 39167846 ~ 39202915 (-) True XLOC_004310
TCONS_00008215 mRNA upstream 918929 40024182 ~ 40030139 (-) True XLOC_004314
TCONS_00008216 mRNA upstream 982888 40088141 ~ 40101246 (-) True XLOC_004315
TCONS_00008207 other downstream 125862 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 900463 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 1776128 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 3850474 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 4609100 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008222 other upstream 1077428 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 1572960 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 1972938 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 2269758 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 5018074 44123327 ~ 44123458 (-) True XLOC_004381

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_10536444_10545622.mRNA True 2600 mRNA 0.45 16 CI01000306 10536136 ~ 10545622 (-)