XLOC_004306 (cldn19)


Basic Information

Item Value
gene id XLOC_004306
gene name cldn19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39013763 ~ 39044595 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008208
CTTTTGCACGCTGTTGAGGGAATCGCAGTTGGCTGGTTCCTGACCGGAGGACGTCTTTACACTCTAATTGCAAACTAAAAGAAACACTAAAGAAAGGGCTACTATGGCCAACTCTGGGTTTCAGCTTCTGGGCTACTTTCTGGCATTGGGAGGATGGATTGGGATCATCTCCACTACGGTGCTACCCCAGTGGAAGCAGTCCTCGTATGCAGGGGATGCCATCATCATGGCTGTGGGCTTGTATGAGGGCCTGTGGATGTCCTGTGCATCTCAGAGTACAGGCCAGGTGCAGTGCAAGATCTTCGACTCTTTGCTTTCGCTGGACGTCAACATTCAGACGTGTCGAGCTCTGATGGTGATCTCTGTGCTCATGGGCTTCATGGGTATCATTGTAAGTGTGGTCGGCATGAAGTGCACAAAGGTGGGTGACAACAACCCATCCACAAAGAGCAAGATCGCCATCTCTGGTGGGAGTCTATTCCTGCTCTCAGGTGTCTGCACGCTGGTGGCCGTGTCCTGGTATGCCGCACAGGTGTCTGCCCACTTCTTCGACCCCAACACACCAACTAATGCCAAGTACGATTTTGGAACCGCCCTCTTTGTGGGGTGGGCGGCGTCCGTCCTGATGATGCTGGGCGGCGCGTTCCTTTGCTGCTCCTGCATCAACGAGGACAGAAGAGGACAGCAGTTCTACCGGCAATCTCAGCCCTCCACAACCAGAGAGTATGTGTAAATACAAACCTATAACTGCACTGCAGCAAAGGACAAACTCTAACTGTAAAGAGCAGCGCATACAAGAGACAGAGCTCTTTCCACCATGAGTACACCTTCACACTCGCAATGACCGTTTATCCAGGTCCAAAACACTCAAACTAAACCCTTACCAGACAAATACTTACATTGTCAAGACCTACGGTCACAGAGGTTTGTGTACTTTTTTCAGAGATACTGTACAAATGTGTATTTTTGCTATACTTTCATTTTCAAGAAAACAATGTGGAAATTCCGTACTGATTTTGACAAATACGGTTTTCTCATCAAGCATTAATAAGCTTTTAAATGAAAGAAATCCTTTCTATAAACCAATTTGAAGCTGAACTCCCTAAGTTGTAAAGAGCATTAACACTGGACATTTTTATATAGTTACTCTAACATAGGTTTCAGGGAAACTTTCATGTGTTTTCATGAAAAGtgaattaaaagtattatttgtggACAAAGTCTAAtcaacaggatttttttttttttgttagctaaaaggcaaataaataataataaaaagattccACATGGAGTACAGCATCTATGTTTGGACTAGAATCCTACTATCTCAAATTCTGcagtatataatatacataatgtGAACGTATGCATGAAATACACTGACGACCcgaacttttttttaaacaagatcaaaagcctttttttgttgccaaaattaaaaaaaaaaaaatata

Function

symbol description
cldn19 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in renal hypomagnesemia 5 with ocular involvement. Orthologous to human CLDN19 (claudin 19).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-242 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in renal hypomagnesemia 5 with ocular involvement. Orthologous to human CLDN19 (claudin 19).

Ensembl:

ensembl_id ENSDARG00000044569

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008208 True 1457 mRNA 0.43 4 39013763 39044595

Neighbor

gene id symbol gene type direction distance location
XLOC_004305 AL845324.2 coding downstream 64012 38947987 ~ 38949751 (-)
XLOC_004304 si:ch211-122l14.6 coding downstream 85003 38926724 ~ 38928760 (-)
XLOC_004303 si:ch211-122l14.7 coding downstream 88819 38922744 ~ 38924944 (-)
XLOC_004302 si:ch211-122l14.4 coding downstream 99498 38912133 ~ 38914265 (-)
XLOC_004301 pimr126 coding downstream 103236 38908406 ~ 38910527 (-)
XLOC_004307 p3h1 coding upstream 31018 39075613 ~ 39105253 (-)
XLOC_004308 CU210919.2 coding upstream 45280 39089875 ~ 39089991 (-)
XLOC_004309 ap5b1 coding upstream 67746 39112341 ~ 39118929 (-)
XLOC_004310 wnt4 coding upstream 123251 39167846 ~ 39202915 (-)
XLOC_004311 NA coding upstream 163589 39208184 ~ 39212765 (-)
XLOC_004063 CR854846.1 misc downstream 22886085 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 26322072 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 26391996 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 26422467 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 26500501 12512966 ~ 12513262 (-)
XLOC_004295 NA non-coding downstream 587960 38339439 ~ 38425803 (-)
XLOC_004294 NA non-coding downstream 814876 38149889 ~ 38198887 (-)
XLOC_004293 NA non-coding downstream 926750 38084872 ~ 38087013 (-)
XLOC_004292 AL928854.1 non-coding downstream 972341 38039964 ~ 38041422 (-)
XLOC_004312 NA non-coding upstream 259002 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 non-coding upstream 593145 39637740 ~ 39645310 (-)
XLOC_004319 CT033813.1 non-coding upstream 1138086 40182681 ~ 40182796 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_10517455_10523487 CLDN19.S, CLDN19 coding CI01000306 null 10517440 ~ 10523654 (-)