hoxd12a (hoxd12)


Basic Information

Item Value
gene id hoxd12a
gene name hoxd12
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17867862 ~ 17870159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818000.1
ATGGAAATGTGTGAGCGGAATCCTTTAAATCCCGGCTATGTTGGTTCTCTGTTAAATTTAACTCCCCCTGAGTCGCTGTATTTCTCCAACTTGCGGGGTAATGGAGCCCACATACCCGGGCTGCACCAGATCTCTTACAATAGGAGAGAGGTGTGCACGCTTCCGTGGACTTCAAGTTCGTGCACGTCAGGACCAGCAGCACCACCACAGAGCCGCGCCTTTGGAGGCTACTGTCCGCCGTGTCTGTCCAACTCGGTGTCTATAAATACTAACTCCTCCAGCGGCCACGTCAAGGCGCATCTGGAGGAGTCAGCTCGATGCTTTCAGGTCACAAACCACAAGACAGAGGAGTCTGGCAGGCGTGAAGAGGTTTACGCCGGGGAGCATGGGTCCGCCAGTGACCGAGGCTACTCAGACCTAGATAGCAGGTCTCACAGTTCTGCGGCCCAACTTGATCCCGATTCAGGCACCAAACAGGAGCAGAATCGCGTTCACCCATCATCTAGTCACTCATGCTCCAGGACGTCTTTCGCAGAAGGTGCCCCATGGTGCTCGTCACAAGTGAGAAccagaaagaagagaaagcCTTACACTAAGCAACAGCTTAATGAACTTGAGAATGAATTTATGATGAATGAATTCATCAACAGACAGAGACGGAAAGAGTTGTCAGAAAGACTGGACCTGAGCGACCAACAAGTGAAAATATGGTTTCAGAACCGGAGGATGAAGAAGAAACGACTGATGATGCGCGAACATGCTTTCTCCGCGTACTGATGACCTTTGGACTTGATCATGACCAGCAGCGCACGGAAAATGTGTTGTACCATGAATGTTGCAGCACATTACATGTGCACACACTTTTCGGTTTGTGGCATGGACTTGTATAGATAGGCTGTGTATAAAAGGTTTATATTCCTGCCATGTGGCTACAGTTTGTATCCAGTCCCAAATTCAGTGATATTAATAGTAATGAAAATGTATTGCAGATTAAGATATAATCGATTCATTTCTGATATTGAAATCAAATGCGCAGTATAGGCCCTGACTCCTGTCTGGCCTGTAGCCGCGGAATAATTAACCTTTTAACCAATGTTTCTTGCAGCTCAAAAGTCTATCAAAACTATTAGCTATTTAAACAGGAATATGGTTCTATATGCGTCTGTGTATTTTGTATGCTGGCCTGCGCATGTGGTGTGGGCCTAATGTAGAAGCAAACAGTCAAGTTCATGTTTACGGACGGATACAACATTAAGTTTTGCgaaatatataattaaattgCATGTCTATTTCCTAATTGCTGTTATTCAATGAAATGCCTGATTTGCCCCCATTTATTGTAAATCTGATTAAATGAGCAAagtaatattgtttttattctctATGGCCTCGACTCGGTCTGTGGTGGAAAGTAATTGCGCCGCATTTAGTGCTAAAAGTTATTACTACAAATGCCTGAAAAACAAGTGTTTGTGCACGACACATTCTGATGGTGTTGGTTTGAACATTATAACTGTATTTAAGAGTGGATTTTTGTTGTGaaacttgtttttgtgttgcTATCCAAACAAATCAGAATCACTCTTGCTCTGTAGGTCTATAAAATACATaacaaatacaatgttttaatataaataatttcCGATTTAACTCATGCATACATCATCACAGAAAGCATGCTATTTGTAAGGATAGGCATTAGACCAGTCATCTTTTTACGCACGGACAAAGATTTTGTAAAATTGACGCAACCTGCAGATGaatacatttgtaaataaagaATTTTTTAATTACCTGAAGAAGAGTGATTGTGCATCATGTaaatcattttatatt

Function

symbol description
hoxd12 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic digit morphogenesis; pattern specification process; and skeletal system development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in clubfoot.

NR:

description
homeobox protein Hox-D12a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09297 HOX_12; homeobox protein HoxC/D12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818000.1 True 1836 mRNA 0.42 2 17867862 17870159

Neighbor

gene id symbol gene type direction distance location
scrn3 scrn3,LOC102796247 coding upstream 219610 17643338 ~ 17648252 (+)
sp9 sp9 coding upstream 232923 17632728 ~ 17634939 (+)
cdca7a cdca7 coding upstream 335606 17527950 ~ 17532256 (+)
zak LOC104965553 coding upstream 341158 17501695 ~ 17526704 (+)
rapgef4a rapgef4,LOC101483582 coding upstream 369778 17465228 ~ 17498084 (+)
hoxd11a hoxd11 coding downstream 3523 17873682 ~ 17878153 (+)
hoxd9a hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463 coding downstream 12307 17882466 ~ 17884616 (+)
hoxd4a hoxd4 coding downstream 25853 17896012 ~ 17899698 (+)
hoxd3a hoxd3 coding downstream 30920 17901079 ~ 17909596 (+)
agps agps,LOC102790648 coding downstream 160666 18030825 ~ 18061294 (+)
G124834 NA non-coding upstream 31636 17834219 ~ 17836226 (+)
G124819 NA non-coding upstream 130876 17736110 ~ 17736986 (+)
G124816 atp5g3,LOC102234286 non-coding upstream 134611 17730056 ~ 17733251 (+)
G124804 NA non-coding upstream 180048 17687571 ~ 17687814 (+)
G124797 chn1,LOC102233772 non-coding upstream 193407 17672255 ~ 17674455 (+)
G124895 NA non-coding downstream 219066 18089225 ~ 18089543 (+)
G124901 NA non-coding downstream 259092 18129251 ~ 18182236 (+)
G124914 adam23 non-coding downstream 317259 18187418 ~ 18188518 (+)
G124915 NA non-coding downstream 318681 18188840 ~ 18189132 (+)
G124924 NA non-coding downstream 363883 18234042 ~ 18297620 (+)
myo3b myo3b other upstream 669272 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 844302 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1766220 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1889988 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 2206848 15618514 ~ 15661014 (+)
hnrnpa3 hnrnpa3 other downstream 140598 18010757 ~ 18017413 (+)
G125079 NA other downstream 832869 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 948594 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1219259 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 1517856 19388015 ~ 19459274 (+)

Expression


Co-expression Network