agps (agps,LOC102790648)


Basic Information

Item Value
gene id agps
gene name agps,LOC102790648
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18030825 ~ 18061294 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818072.1
GCAGCGCACTTTTCCTGTGCTGACCTCTGACAGCCGCTCATGGATCCGCTCCCTACCTTCACAAACACGGAAGCAGCATGGCGTCCAACAGCAGCTCCGACAGGCAAAGAATTGCACAGCAAAGACTGAGAATAATTGCCGGACATTTACAGGGACCGGTGGACAGTGACTCGACAATCCTAGCCGCGGAGTGCAAAGCCCAGGGCAGCAAAACAGATGTCTCCAGTGAGAGGAAGACGGTGCCGAGGAGAAGGCAGGAGATTTTGAAATGGAACGGTTGGGGATACAATGATACAAGATTCCTCTTTAATAAGAAAGGTCAAGCAGAATTTACCGGTAAAAGGTATAGACTAAGTGGTATGATCATCCCTGCTCTGCAAAATTGGTTTGAAGGCACGTTTGGAGCCAGTATGCAGCATAAATCTCCAGCAATGCCCATTTTGACTAGCAGTGCTGTACAGCCTCCCACTCTTAATGAGGCCTTCGTGGATGAACTGAAATCCACAGGTATTCCCTTCTCTCATGATGCAGAGGACCGGGTGTTTCGTGGCCATGGCCATTGCTTACACGAGGTCTTTGCTCTGCGAGAGGGGAAAGTTGGTCGTGTTCCAGATATAGTGGTATGGCCAAATTGTCACAATGATGTAGTGAAAATTGTGGAACTGGCATGCAaacataatgtttgtttgataCCATATGGAGGAGGGACTAGCGTCTCCAGTGCCCTAGAGTGCCCCCCAGAGGAAACTCGCTGCATTGTCTCTCTGGATACCTCACAGATGAACCGCATCCTGTGGATTGACGAGAAAAATTTAACCGCCCATGTGGAAGCTGGCATTGTCGGTCAGGAATTAGAAAGATTGcttAATGAGAGCGGCTACTGTACTGGGCATGAGCCAGACTCCATGGAGTTCAGCTCCCTGGGGGGCTGGGTAGCAACCAGAGCATCAGGCATGAAGAAGAACATCTATGGCAACATTGAGGACCTGGTTGTCCACGTAAAGATGGTGACCCCACAAGGAGTGATTGAAAAGGGCTGTCAGTGCCCGCGCATGTCCACGGGGCCAGACATTCACCACTTCATCATGGGCTCAGAAGGAACCCTGGGTGTGGTTACTGAGGTAACGATGAAGATTCGTCCCATGCCGGAGTATCAGAAATACGGCTCAGTGGTATTCCCTAATTTTGAGCAGGGAGTTGCCTGTCTCCGAGAGGTTGCCAAACAGAGGTGTGCACCTGCATCTATACGGCTCATGGATAATGAACAATTTAAATTTGGTCATGCCCTGAAGCCTCAAGTATCCTCAATTTTCACATCCTTTCTGGACGGGTTGAAGAAATTTTACATCaccaagTTCAAAGGGTTCGACCCCGACCGCTTGTGTGTGGCCACCCTACTGTTTGAGGGAGACCGTGAGAAGGTCCTGCAGCATGAGAAGCAAGTTTATGACATTGCTGCAAAATTTGGGGGGCTGGCAGCTGGAGAGGACAATGGGCAGAGGGGCTACATGTTGACCTTCGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTATGTGATCGGGGAGTCCTTTGAAACCTCTGTGCCTTGGGACAGGGTGTTGGACATTTGCCGGAACGTAAAGGCACGCATCATTCAAGAGTGTAAAGACAAAGGAGTGCAGTTTTCACCGTTATCCACATGCAGGGTGACTCAGACATACGACGCTGGTGCCTGTGTCTACTTCTACTTTGCCTTTAACTACAGGGGACTCAGTGATCCAGTGCACGTGTATGAACAAGTGGAGcatGCAGCTAGAGAGGAGATCCTTGCCAATGGAGGGAGCTTGTCACATCACCATGGAGTGGGGAAACTTCGGAAGGAGTGGATGAGAGAGACCATCTCGGATGTCGGCATGGGGATGCTTAAGTCTGTCAAGAACTACGTGGACCCCAAAAACATCTTCGGCAACAGGAACCTCATCTAATTTCCCGCTCACCTTAATCTCACCTTTTTCTAAAAAGCATCTTGTGCATTTTGGATTAATAGATACTAAATGTGAATTGAAAATGGACAGAGATGTTGTCTTTTTCATCAAAAGTGTCATTCGGTGCCATCTAAATATTCACCCAAaccttttcttttactttaatTTGCACTTAATATGCTGTAACAATCATTGTCACTCACGGTGAAGCTCatttttgctgttgttgttggagcTACGGCCATGATGCAACCAGACATAATGCAACAAAATCTtgatttttgtcatattttcttATGTTTAACCATTTCCTAAATATCCTTGCCAACATGGTTAATTCATCGGTTttactttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcacttCTTTGGGGTTAGTTCTAGATGAATGCGCTCTGTGCCTTTTCTAAAGCTTATGTCtgccttccccccccccctcctactAAACACTCTGCTGGTGTACACTGAGTCCCTTTGTGAAGAGAACAGAACTTGGACATGTTTCCTCTGTCTTCATCCTTCACTTGCCCTCATGCCTGTTGTACTGACCTATTGCCATAAGAGACTTTTTCTGGACTgactgcatgtgtgcgtgtgtgcctcTGCCCCACCAAATTTTAACAAgcaccccctcctcccccctccccctcctagTAGTACAGTATGATTATACAGAGAGAAATTACTtgtgtgtttagttttttgtacTGAAAGTGTTTATCTTACATGGTTTGTTACTAAGAAAGTgaagtggggggaaaaaaaagccattgCGTTTTTTCGATCACGCCTGCTTCAATGTGACCGCGCTCGCAATGTAAGCCCTATAGATCCCGGTGCTCACGTCCAACCAAAGACTCAACACATCAGATCATGCAAACATACCATAAACATATGTTTGACAATGTGaccttcacacacatttacttaCTTCGTGCAAAGCTAAACTATATTTTTGAATCAACATATGCAACGATAACCCTTCTGAGAGCTGTAAAATGTAGATATTTGTTACTGTTACATGTCCTAAAACTTTCTACATCATGTTTCTTATGTTAAAGACACTGTATTGAATTATTTCTgctttatagattttttttttccctgaaaGTTTCCCTTGTTAATCTGTAGTGTGTAAAGGTTTTTTTGAACGGATACTGTAATGTACCAAAATTTGGTACCAGACTTGTTCCATTGTCACCATTGATTTTGAAGCAAAGTAAAGCTTTAAGAAAGCTGTTTGCTGATGAATCTTGCCTTTTTTACCTTCTTATCTGTGGTTCACATTTTCCTCGACCACCTTGTCCTTTTTTAATTCATATTTCCCCAAAATAAAAGAACTTATTAGGGACCCATCATGTGACATTTTACCTCGGTGTCAAAAATGTGCGAGAGCTTTTGAACGTTATGGATGtaccttttttgttattttccaCTTCTCTTAACAACGTAACATCCGAGTacattgtgtctgtttgtgcaaTAAATTGAACTAAAAAACCCCA

Function

symbol description
agps Predicted to enable FAD binding activity; alkylglycerone-phosphate synthase activity; and oxidoreductase activity. Predicted to be involved in ether lipid biosynthetic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be located in peroxisome. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctata and rhizomelic chondrodysplasia punctata type 3. Orthologous to human AGPS (alkylglycerone phosphate synthase).

NR:

description
alkyldihydroxyacetonephosphate synthase, peroxisomal-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008609 alkylglycerone-phosphate synthase activity molecular_function

KEGG:

id description
K00803 AGPS, agpS; alkyldihydroxyacetonephosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818072.1 True 3615 mRNA 0.45 20 18030825 18061294

Neighbor

gene id symbol gene type direction distance location
hoxd3a hoxd3 coding upstream 121229 17901079 ~ 17909596 (+)
hoxd4a hoxd4 coding upstream 131127 17896012 ~ 17899698 (+)
hoxd9a hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463 coding upstream 146209 17882466 ~ 17884616 (+)
hoxd11a hoxd11 coding upstream 152672 17873682 ~ 17878153 (+)
hoxd12a hoxd12 coding upstream 160666 17867862 ~ 17870159 (+)
osbpl6 osbpl6 coding downstream 57230 18118524 ~ 18153899 (+)
gpr1 gpr1 coding downstream 150658 18211952 ~ 18213811 (+)
LOC120569837 ndufs1 coding downstream 153677 18214971 ~ 18223611 (+)
LOC120569834 ino80d coding downstream 162954 18224248 ~ 18233735 (+)
uggt2 uggt2 coding downstream 474273 18535567 ~ 18581030 (+)
G124841 hoxd12,hoxd10,LOC108239741,LOC107579206 non-coding upstream 149320 17860753 ~ 17881505 (+)
G124834 NA non-coding upstream 194599 17834219 ~ 17836226 (+)
G124819 NA non-coding upstream 293839 17736110 ~ 17736986 (+)
G124816 atp5g3,LOC102234286 non-coding upstream 297574 17730056 ~ 17733251 (+)
G124804 NA non-coding upstream 343011 17687571 ~ 17687814 (+)
G124895 NA non-coding downstream 27931 18089225 ~ 18089543 (+)
G124901 NA non-coding downstream 67957 18129251 ~ 18182236 (+)
G124914 adam23 non-coding downstream 126124 18187418 ~ 18188518 (+)
G124915 NA non-coding downstream 127546 18188840 ~ 18189132 (+)
G124924 NA non-coding downstream 172748 18234042 ~ 18297620 (+)
hnrnpa3 hnrnpa3 other upstream 13412 18010757 ~ 18017413 (+)
hoxd10a hoxd10,LOC102792757 other upstream 149497 17860160 ~ 17881328 (+)
myo3b myo3b other upstream 832235 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 1007265 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1929183 16099271 ~ 16101642 (+)
G125079 NA other downstream 641734 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 757459 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1028124 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 1326721 19388015 ~ 19459274 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 1907066 19968360 ~ 19993324 (+)

Expression


Co-expression Network