hoxd9a (hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463)


Basic Information

Item Value
gene id hoxd9a
gene name hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17882466 ~ 17884616 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818001.1
cagaaaatgtgtttttattcgcCGAATGTTAACAATGGATACACCGCCTTGTGAACGGAAATGGCGTCTGTTATTTTACAACATGTTATTACATATATTTTACGAGGACTCCTTAAGTCTATAAAGCATTTTACTAGCATTGAGGGCATCAGGACGATATTAGGAGAGTGTTCTCCAACATTAAGTAAGATACGGGATGTTGGTGCACTGTGTGTGTTGGGGCGGGAAATATGTCTTATTCCTTTTTTGATCTGCTTGTATTGTTGCAGCGTCCTGCAGCCACCCGCACATGAGAAACAGAAAACCCCATTTGCATACATTTGAGCGATTGCTTTCTCCCCCCAGTCACATCTGATGGGGCTTTTTATTATTCGTGAAATGAAAAGCTAAATTAAACCTGACGACGAAAAAAAAAGGGCAGGATTGATTTACTCGCTGTATTGGTAAATATGACCACGTGATCCATGTAACCAATCCCTGTAGATGCAGGCCAGCAAAAATACTATGATTGTTCATAGAGGGAAGCTTCCCGTAACAGTGCAACCCTTATTATATGACTAGGAAGAGAtcaaaaatgtcttccagtggcACTCTCAGTAACTGCTATGTGGACGCTATAATGGGGCAGGAGCCGGAGGATGTCTACGGTGCTCGCTTTATTCAGGCTCCGCACACGGTGACGCCGAGGCCGTCAGGTGCTGGGGACAACGCAGACTTCTCCTCTTGTAATTTTGCACCAAAGTCCGCCGTTTTCTCGTCGTCTTGGTCCTCTGTTCACCCGCAGGGGATTTATCATCCGTATgtgcaccaccaccaccaccaccagtccCATCTCCCCGGCTCGGACGGCAGATATGTAGGCGTCCGCTCCTGGATGGACCCCATCTCCAACCACGTTTCTTTCGCCGGATTTCACTCCAGCAGTCGGCCGTACGGGACAAAGCCAGAGGTCTTGCCACCGAAAGCAGAGTGCGACACGCTGGAGGCAGAGGCTCGGCCGCTCGCCGGCGAATTCGCGTGTGGAGTATCGGAGTGTCCAGAAAAAGCGACCAAAGAGCATAGTGGAAGTGAGCTTTCGAGCCACAGCGAGCCCAAAGaggagaaacaacaacaactcgaCCCAAACAACCCTGCAGCAAACTGGATTCACGCACGCTCCACGAGAAAGAAGCGATGCCCGtacacaaaatatcagacatTAGAGCTGGAGAAGGAGTTCCTTTACAACATGTATTTGACAAGAGACCGACGCTATGAAGTGGCCCGCATACTCAGTTTAACCGAGAGACAAGTGAAGATCTGGTTCCAGAACAGGAGGATGAAaatgaagaagatgaagaaagaaAGCAGCGGCGGCAAGGAGCAGCTATGAAATCACTGCCATTTCACACATTTGTACCAAGGAAGCCATCTGAAAAATTAAATTCATTTTGGTAGGAGCCTCGGtagccattttcattttttagtcCATAGGTATAGCGTGATATTGCGTGTCAGTGTCCTAACGTGTTGGCCAAATATGCATCAAAATCACATGTGCAGGAATTTGTCTTGGTGAGACTCTGACAGGATCCATCAAATAGGCTATGTTTCATCTAAAATGCTCtctgttttacattttacacaacCGCAAGCAGTTCATCAGATGTGTTG

Function

symbol description
hoxd9 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm.

NR:

description
homeobox protein Hox-D9a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818001.1 True 1653 mRNA 0.47 2 17882466 17884616

Neighbor

gene id symbol gene type direction distance location
hoxd11a hoxd11 coding upstream 4313 17873682 ~ 17878153 (+)
hoxd12a hoxd12 coding upstream 12307 17867862 ~ 17870159 (+)
scrn3 scrn3,LOC102796247 coding upstream 234214 17643338 ~ 17648252 (+)
sp9 sp9 coding upstream 247527 17632728 ~ 17634939 (+)
cdca7a cdca7 coding upstream 350210 17527950 ~ 17532256 (+)
hoxd4a hoxd4 coding downstream 11396 17896012 ~ 17899698 (+)
hoxd3a hoxd3 coding downstream 16463 17901079 ~ 17909596 (+)
agps agps,LOC102790648 coding downstream 146209 18030825 ~ 18061294 (+)
osbpl6 osbpl6 coding downstream 233908 18118524 ~ 18153899 (+)
gpr1 gpr1 coding downstream 327336 18211952 ~ 18213811 (+)
G124841 hoxd12,hoxd10,LOC108239741,LOC107579206 non-coding upstream 961 17860753 ~ 17881505 (+)
G124834 NA non-coding upstream 46240 17834219 ~ 17836226 (+)
G124819 NA non-coding upstream 145480 17736110 ~ 17736986 (+)
G124816 atp5g3,LOC102234286 non-coding upstream 149215 17730056 ~ 17733251 (+)
G124804 NA non-coding upstream 194652 17687571 ~ 17687814 (+)
G124895 NA non-coding downstream 204609 18089225 ~ 18089543 (+)
G124901 NA non-coding downstream 244635 18129251 ~ 18182236 (+)
G124914 adam23 non-coding downstream 302802 18187418 ~ 18188518 (+)
G124915 NA non-coding downstream 304224 18188840 ~ 18189132 (+)
G124924 NA non-coding downstream 349426 18234042 ~ 18297620 (+)
hoxd10a hoxd10,LOC102792757 other upstream 1138 17860160 ~ 17881328 (+)
myo3b myo3b other upstream 683876 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 858906 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1780824 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1904592 15970982 ~ 15977874 (+)
hnrnpa3 hnrnpa3 other downstream 126141 18010757 ~ 18017413 (+)
G125079 NA other downstream 818412 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 934137 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1204802 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 1503399 19388015 ~ 19459274 (+)

Expression


Co-expression Network