chrna10a (chrna10,LOC102305724,LOC102783135,LOC102213612,LOC100689876)


Basic Information

Item Value
gene id chrna10a
gene name chrna10,LOC102305724,LOC102783135,LOC102213612,LOC100689876
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 38771274 ~ 38779606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792893.1
ccagTATAGTCAGTGGCATTTGGTGGTGGTGCATTCGCTCTCAGTctgatttcctttttttttttagtgaatGAAACGTGTTAGGCACACAGCAACTCAATGGTCTTTGGGTCGAGATAATTTGTTTCAGCAAGATGAAACGATGGAGAATCCAAACTTTATTTCGCTTCCTTCTGTATGTCAGTATTTTGCAAACCTGTTGCTGTGCTCAGGGGAAATACGCTCAGAAGCTCCTGCATGATTTATTCACTGACTACACTAGTGCCCTGAGGCCTGTGGAGGACACAAACACCATACTGAATGTGACCCTGCAGGTTACACTGTCACAAATTATCAACATGGATGAGCGAAACCAAATTTTGACTGCATATTTATGGATACGACAAGTGTGGGTTGATGCACACCTCAAATGGAATAAAGATGATTACGATGGACTCGATACCATTCGAATACCTAGTAGTTATGTATGGAGACCTGATATAGTCCTATATAACAAtGCTGATGACCATTTCACTGGCTCCATGGACACCAATGTGGTGATCCGGCATGATGGCCAGATTATGTGGGATTCCCCTGCTATCACTAAGAGCTCCTGCAAAGTGGATGTGTCCTTTTTCCCCTTCGATTCTCAGCAGTGCCGGTTTACATACGGCTCCTGGACTTATAACGGTAACCAGCTGGACATCCTGAACGCCATGGAGAGCGCTGACCTGGCTGACCTGGTGGAAAATGTGGAGTGGGAGGTGATGGGAATGCCGGCTAAGAAGAACATTATTCAGTATGGCTGCTGTGCTGACCCTTACCCTGACGTGACCTACACACTGAAACTGAAGAGAAAAGCTTCCTTTTACGTCTTCAACTTGCTCATTCCATGTGTGATGATCTCTTTCCTGGCACCACTGGGCTTCTACCTGCCTGCTGACTCTGGAGAGAAGGTGTCTTTGGGTGTCACCGTGATGCTGGCACTCACTGTCTTTCAGCTGTTGGTTGCAGAGATCATGCCACCCTCTGAGAATGTGCCACTTATTGGAAAGTATTACATTGCAACGATGACCATGATCACTGCCTCCACCGCCCTGACCATCTTCATCATGAACATACACCACTGTGGCCCGGATGCCAAGCCTGTTCCCAAATGGGCCAAGAAAGTCATTCTGCAGCACCTGGCCAGAATGTGCTTTGTTTATGAAGTCGGGGAGAACTGCTTGTCACCACAGCCGGAGAAACAGGAGCCTCCTCTTGTAAAGAACATCAACTGCACCATGAATGGTCAGACAGGACAAGGCAGAGAGGACTGTGTCTTCAAAATGGAGAGAGAACAAGAGACAGTGGGCTCCATGACTGCAGAGGAGAGGGAAGACATGGATCAGATGATGAGCCCGATAGGCTCAATTGGGAAGAACCCCACCGACAACTACAGCACTTGGAAGAATGGCATTTTCATGAGCATGGACTGTGGAGATTTGGGGAGTCAGGGGAGATGCAGGAAGGGAGGTGTgagtgatggagagagaaatGACAGAGATGTTTCCTGCAACAGTCAAAGCAATGAGAAGCATCTGCTGCGTAACATTGAGTACATAGCCAACTGTTACAGAGATCAGAGGGCAACGCAGAAAAGGACTGGGGAATGGAAGAAAGTAGCCAAAGTTTTAGACCGCTTCTTCATGTGGATATTTTTTATAATGGTGTTTTTAATGAGCCTTCTCATCATGGGCAAAGCCATCTAACTGCAGATCTGAGAAGTTGGTCTTAAGGAAAGTGTTAATAGGTCTACATAACACAGAGATTATTACAGGTTAGTACAGGATTCATTAAGTACTACACTTTATCCAATAATTTGAATAACATTCAGATTGCACTTTTTCTTAACGTTTTAGAAATGGTCTATTCTGCAGTAATAATTATAAGTAGAATTAGATATTTCATAAACGTCTTGTTTATGGATTTTGTTGTTGACAACTTGCGTTCCCCAACTTTTGTCCCAATCCTGTGTGAAAGTTACTAAACTCAGCCAAGACATATAAGTGTGTTAGCAAATCAATACAATTTTCTACTGATGGTATTTCCACAatgttgtgcttttattttaaataaatgaaattggTTTAGTTAA

Function

symbol description
chrna10 Predicted to enable acetylcholine-gated cation-selective channel activity. Acts upstream of or within positive regulation of cytosolic calcium ion concentration. Predicted to be located in membrane. Predicted to be active in cholinergic synapse and neuron projection. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-10

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04810 CHRNA9; nicotinic acetylcholine receptor alpha-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792893.1 True 2116 mRNA 0.44 5 38771274 38779606

Neighbor

gene id symbol gene type direction distance location
apbb1 apbb1 coding upstream 862099 37895706 ~ 37909175 (+)
LOC120574139 ilk coding upstream 877497 37877229 ~ 37893777 (+)
si:ch211-149e23.4 NA coding upstream 902308 37856469 ~ 37868966 (+)
nectin3a nectin3 coding upstream 938256 37801695 ~ 37833018 (+)
LOC120553400 NA coding upstream 974504 37791517 ~ 37796770 (+)
or71aq2 LOC104946036 coding downstream 13753 38793359 ~ 38794294 (+)
LOC120551784 LOC104946035 coding downstream 18071 38797677 ~ 38798618 (+)
LOC120548469 LOC102195737,LOC102793578,LOC101475763,LOC106675049 coding downstream 24033 38803639 ~ 38812552 (+)
LOC120548255 LOC104947571 coding downstream 47109 38826715 ~ 38827683 (+)
LOC120552206 NA coding downstream 81307 38860913 ~ 38861878 (+)
G22546 LOC100691215,LOC103353587 non-coding upstream 21521 38743683 ~ 38749753 (+)
LOC120573138 NA non-coding upstream 840837 37912602 ~ 37930437 (+)
G22380 NA non-coding upstream 1059570 37709974 ~ 37711704 (+)
G22369 NA non-coding upstream 1085354 37684024 ~ 37685920 (+)
G22368 NA non-coding upstream 1090146 37679770 ~ 37681128 (+)
G22558 NA non-coding downstream 6518 38786124 ~ 38786369 (+)
G22559 NA non-coding downstream 9816 38789422 ~ 38789702 (+)
G22566 NA non-coding downstream 36992 38816598 ~ 38817001 (+)
G22567 LOC108267897 non-coding downstream 74879 38854485 ~ 38854718 (+)
G22582 NA non-coding downstream 133527 38913133 ~ 38913952 (+)
robo1 robo1 other upstream 466484 37934936 ~ 38304790 (+)
G22263 LOC103133141 other upstream 1327446 37440872 ~ 37443828 (+)
dynll2a dynll2a,LOC107554284 other upstream 1501975 37263810 ~ 37269299 (+)
G22106 wdr81 other upstream 1942863 36827910 ~ 36828411 (+)
G22099 wdr81 other upstream 1955636 36813848 ~ 36815638 (+)
brca2 NA other downstream 443120 39222726 ~ 39239448 (+)
G22731 NA other downstream 903039 39682645 ~ 39686026 (+)
G22827 LOC103363423 other downstream 1163969 39943575 ~ 39945875 (+)
tiam1b tiam1,LOC103360909 other downstream 1381676 40161282 ~ 40186136 (+)
LOC120544392 grik1,LOC100705871,LOC102307112,LOC103360904 other downstream 1423689 40203295 ~ 40247024 (+)

Expression


Co-expression Network