LOC120574078 (LOC103371863,LOC106930631,LOC103154952,LOC106957020,LOC105929964)


Basic Information

Item Value
gene id LOC120574078
gene name LOC103371863,LOC106930631,LOC103154952,LOC106957020,LOC105929964
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2645826 ~ 2691562 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU204669
gGGCTCTGGAGAAAAGGATGCTGAAGATGTCAAAAAACAACCGTTTTTCAGGGGCATGGACTGGGAGGCTCTTCTTCAGAGGAAGGTCCCGCCCCCGTTCGTCCCGACCATCGGAGGAAAAGAAGACGTCAGCAACTTTGACGTGGAGTTCACGGCCGAGGCTCCCGCCCTGACGCCCCCCCGCGAGCGCCGCAACCTCTCCCGCAAGGAACAGGATTACTTCAAGGATTTTGACTACGTCTCAGACCTCTGTTAGAGTCCCATGGGTCACAGGGGGGTCAGCCACAGACTCTGAGAGGAGACTGAGAAGCGAAAGGCGGCTGACTCTCTGCCCCCACAACCTGGGAGAGAGGAACTCAATGGTGATGAGAGGCGATGATCACTCCTTAactgttctttgtttttaatctctccgtctgtttgtttgtt
>TU204682
CCGCCCCCCCTGTCTGTCTCCAGTCTGATGTGTGAGAAGCGGATCTTTGAGGCCGTCAACGGCTCCCACCACCCCTTCCTGGTCAACCTGTTTGCATGTTTCCAGACGCCAGAACATGTGTGTTTTGTCATGGAGTACACAGCGGGAGGAGACCTCATGATGCACATACATGCCGACGTCTTTTCTGAGCCACGCGCTGTCTTCTACTCGGCTTGTGTGGTCCTGGGTCTGCAGTTCCTTCATGACCATAAGATTGTGTATCGGGATCTTAAATTGGACAACCTGCTGCTCGACACAGAGGGTTTTGTGAAGATAGCAGACTTTGGGCTCTGTAAAGAAGGCATGGGCTATGGGGACCGGACCAGCACCTTCTGTGGGACCCCAGAGTTTCTGGCCCCGGAGGTGCTGACAGACACATCGTACACACGGGCAGTGGACTGGTGGGGGCTCGGGGTGCTCGTCTACGAGATGTTGGTCGGGGAGTCTCCGTTCCCAGGTGACGATGAGGAGGAGGTTTTCGACAGCATCGTGAACGATGAAGTGCGCTACCCTCGCTTCCTCTCCACCGAAGCCATCGGCATAATGAGACGGGTTAGACTCCGCATACTTCTG
>XM_039824139.1
CGAAGGTGGGGCTCGTTCTGTGCTgttctctcttcctttcctcctccGTCTCGTTCAGTcgctccgttttttttttttagatcagaTGGCTTTTGATTCCTGGCGGGAAGGACATCCTGGATTTTTGAGGAGGCAGGAATAGCACTCGGTGTTGCCTGATTGGGCGCTGCCGTAAGTGTGTGACAGAGGGTAGGGAGGGAGGGTAGGGGCTGCCAGGAGCGAAGCCAGAAGGAGGCCAAACATGGCCAGCGATGACGGGCTCGAGGAGCTGCCAGGGGACCAACGGCCTGACTCCCCAGTTCACGCTGAGCAGGGTGACACAGACTCTTCGGGCGATCCTGGCGGGCTGCCGGTGCTCCAGCAGCTCGGTCTGGACCAAAACTCTGACTTCTCTGACTCCAGCGTGCAGCAGTGCCTGGACGAGCACCGCGAGAGGATCCGCAGGGAGATCCGCCGGGAGCTGAAGATCAAGGAGGGGGCTGAGAACCTGCGCCGGGCCACCACCGACAAGAGGAACGCCCAGCAGGTGGACTCGCAGCTCCGCAGCTCCACGCGCAAGCTGGAGTCCCTCCACGCTCAGCTGCAGGAGCTGGACGCACACATCGTCGTCAAGGGCCCCGATGACAACAAAGATGCCCCGAAGTCTCCGGACGCGCTCAACCGGACGTCGGCCAACCAGCGGCGCATCGCAGCTCTGGAGCGCCAGCTAAACATCGAGCTCAAAGTCAAACAGGGAGCCGAGAACATGATCCCAATCTATGCCAACGGAGTCACAAAGGACAAGAAGCTTCTCCAGACGACTCAGCAGATGCTGCAGGACAGCAAGACCAAGATCGACATCATCCGCATGCAGGTCCGGAAGGCCATGCAGGCCACGGAGCAGTCCGAGGACAACCAAAGTAAGCATGACGGGGTGGAGCTGCGCGTGGAGGAGCTGTGGCATCACTACCGCGTGGAGCACGCCATGGCCGAGGGCGCCAAGAACATGCTGCGCCTGCTGGGAGCCGGGAAGGTCCAGGACAAGAAGGCCATAGCTGAGgctCAGTGCGGTCTGAGCGAGTCCTCCCAGCGCCTGGACCTGGTGCGCTGCTCTCTGGAGCAGCGCCTGCAGGAGCTGCCTGAGGACCATCCCAAGGCCTGCCTCATCAAGGAGGAGCTGGTGCtcgcctcctcctcggcttTCAGTGCCCGCCACAGCACCCCCTACGTCCACAACCAGTACAGCACCATGAGCAAGCCTTCACCACTCACagGTACTCTGCAGGTGCATCTCCTGGGCTGTGTGGGGTTGCTGGAGGTGATCCCGGGACGGACCAAAGGGAGCCCGCTGGTTCTTCCCTCGTACTCTCCGGGAGATGGACGCTCGTCCTTCAAACTGAGCGGCCTTTACAGCCGCAGCTCCAGCAGCATGAGCCTGAAGATCCCTGGCAAGACCGAGGAGCTCTCCTcgGAGGTGAGCGCCGTGCTGAAGCTGGAGAACACCGTGGTGGGTCAGACGGTGTGGAGGACGGTCGGGGAGCAGGCCTGGGACCAGAGCTTCACTCTGGAGCTGGAGAGATCCAGGGAGATGGAGATCGCAGTGTACTGGAGAGATTACCGCTCCCTGTGCGCTCTGAAGTACCTGAAGCTGGAAGAGTTCCTGGACAACCAACGGCACCGAGTCCAGCTGGAGCTGGAGCCACAGGGGCTGCTGCTGGCCGAGGTGACTTTCTTTAACCCGGTAATAGAGAGAGGCCGAAAACTCCAGAGGCAGAAGAAAGTCTTCTCCAAGCAGCACGGGAAAGCCTTCGTGCGTGCTCGTCAGATGAATGTGGACATCGCTACCTGGGTCCGCCTGCTCAGGAACGCCATTCCCAGTGGCAGCAACACACCGTCCTACACGCCCAGCTTCACCAGCAGCACGCTCACACACAGCGCAGGAGAAATCTCCGTGGAGAAGTTGAATCTGGGCAGCGACTCTCCCCCCAAAGCTGATATCCGGAGAGATGTGGTGGACGCACCGGCTTCCttgGAACAGATGGCGGTCATTGAACCCCCGTCCACGCCGGACGCCGCTCTTCACCAGCAGCCAACCAGATCGCTGTCCCAGAACTCTATACGCAgACCAAGCAGAGGCCCTCTCTGCCTTCAGGACTTCAAGCTGATAGCAGTGCTCGGCAGAGGCCACTTTGGGAAGGTGTTGCTGTCAGAGTACAAAAGGACAGCCAGTTTAAGTGTCTCCTTCGCCCCCATCCTCCCTCCCCCACCGCCCCCCCTGTCTGTCTCCAGTCTGATGTGTGAGAAGCGGATCTTTGAGGCCGTCAACGGCTCCCACCACCCCTTCCTGGTCAACCTGTTTGCATGTTTCCAGACGCCAGAACATGTGTGTTTTGTCATGGAGTACACAGCGGGAGGAGACCTCATGATGCACATACATGCCGACGTCTTTTCTGAGCCACGCGCTGTCTTCTACTCGGCTTGTGTGGTCCTGGGTCTGCAGTTCCTTCATGACCATAAGATTGTGTATCGGGATCTTAAATTGGACAACCTGCTGCTCGACACAGAGGGTTTTGTGAAGATAGCAGACTTTGGGCTCTGTAAAGAAGGCATGGGCTATGGGGACCGGACCAGCACCTTCTGTGGGACCCCAGAGTTTCTGGCCCCGGAGGTGCTGACAGACACATCGTACACACGGGCAGTGGACTGGTGGGGGCTCGGGGTGCTCGTCTACGAGATGTTGGTCGGGGAGTCTCCGTTCCCAGGTGACGATGAGGAGGAGGTTTTCGACAGCATCGTGAACGATGAAGTGCGCTACCCTCGCTTCCTCTCCACCGAAGCCATCGGCATAATGAGACGGGTTAGACTCCaaaaataaaaaactacgGGCTCTGGAGAAAAGGATGCTGAAGATGTCAAAAAACAACCGTTTTTCAGGGGCATGGACTGGGAGGCTCTTCTTCAGAGGAAGGTCCCGCCCCCGTTCGTCCCGACCATCGGAGGAAAAGAAGACGTCAGCAACTTTGACGTGGAGTTCACGGCCGAGGCTCCCGCCCTGACGCCCCCCCGCGAGCGCCGCAACCTCTCCCGCAAGGAACAGGATTACTTCAAGGATTTTGACTACGTCTCAGACCTCTGTTAGAGTCCCATGGGTCACAGGGGGGTCAGCCACAGACTCTGAGAGGAGACTGAGAAGCGAAAGGCGGCTGACTCTCTGCCCCCACAACCTGGGAGAGAGGAACTCAATGGTGATGAGAGGCGATGATCACTCCTTAactgttctttgtttttaatctctccgtctgtttgtttg

Function

NR:

description
PREDICTED: serine/threonine-protein kinase N1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204669 False 429 TUCP 0.55 2 2689720 2691562
TU204682 False 612 TUCP 0.56 5 2685103 2689038
XM_039824139.1 True 3289 mRNA 0.59 22 2645826 2691560

Neighbor

gene id symbol gene type direction distance location
wu:fb95e10 NA coding upstream 64528 2520715 ~ 2581298 (+)
LOC120574835 mcoln1,LOC104930122,LOC101475291,LOC102295873,LOC106517836 coding upstream 151907 2461243 ~ 2493919 (+)
trappc5 LOC103358680,LOC104930124,LOC100705746 coding upstream 186577 2453750 ~ 2459249 (+)
LOC120575157 gcdh,LOC102794743,LOC101471797,LOC102209187,LOC100704678 coding upstream 526703 2091477 ~ 2119123 (+)
LOC120573865 NA coding upstream 869255 1767641 ~ 1776571 (+)
engl NA coding downstream 7364 2698926 ~ 2733225 (+)
si:ch211-106h11.1 LOC103371866,LOC102800031 coding downstream 78807 2770369 ~ 2783645 (+)
ddx39ab LOC103375030,LOC108439109,LOC100706537 coding downstream 96053 2787615 ~ 2798867 (+)
txn2 LOC104942977 coding downstream 152018 2843580 ~ 2861069 (+)
LOC120574089 LOC103376082 coding downstream 182393 2873955 ~ 2928197 (+)
G151077 NA non-coding upstream 1690 2399900 ~ 2644136 (+)
G151100 NA non-coding upstream 13772 2585422 ~ 2632054 (+)
G151093 NA non-coding upstream 155690 2474896 ~ 2490136 (+)
G151084 NA non-coding upstream 221072 2424436 ~ 2424754 (+)
LOC120574898 NA non-coding upstream 221863 2423194 ~ 2423963 (+)
G151112 NA non-coding downstream 37182 2728744 ~ 2729495 (+)
G151130 NA non-coding downstream 245922 2937484 ~ 2944611 (+)
G151131 NA non-coding downstream 249047 2940609 ~ 2941036 (+)
G151243 NA non-coding downstream 305547 2997109 ~ 2997374 (+)
G151244 NA non-coding downstream 306495 2998057 ~ 2998259 (+)
G150960 NA other upstream 428827 2148731 ~ 2216999 (+)
G150905 NA other upstream 578178 1936920 ~ 2067648 (+)
G150804 NA other upstream 876932 1761280 ~ 1768894 (+)
G150386 NA other upstream 1320726 1324062 ~ 1325100 (+)
G150465 LOC105897445 other upstream 1337453 1284929 ~ 1308373 (+)
G151122 LOC103375031,LOC102776069 other downstream 107907 2799469 ~ 2802221 (+)
G151240 NA other downstream 310337 3001899 ~ 3003364 (+)
junbb LOC103364966,LOC107087652,LOC104932219,LOC100707881,LOC105929935 other downstream 392336 3083898 ~ 3104592 (+)
G151315 NA other downstream 454942 3146504 ~ 3147977 (+)
LOC120573829 NA other downstream 552048 3243610 ~ 3277604 (+)

Expression


Co-expression Network