RNA id: XM_039824139.1


Basic Information

Item Value
RNA id XM_039824139.1
length 3289
RNA type mRNA
GC content 0.59
exon number 22
gene id LOC120574078
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2645826 ~ 2691562 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAGGTGGGGCTCGTTCTGTGCTgttctctcttcctttcctcctccGTCTCGTTCAGTcgctccgttttttttttttagatcagaTGGCTTTTGATTCCTGGCGGGAAGGACATCCTGGATTTTTGAGGAGGCAGGAATAGCACTCGGTGTTGCCTGATTGGGCGCTGCCGTAAGTGTGTGACAGAGGGTAGGGAGGGAGGGTAGGGGCTGCCAGGAGCGAAGCCAGAAGGAGGCCAAACATGGCCAGCGATGACGGGCTCGAGGAGCTGCCAGGGGACCAACGGCCTGACTCCCCAGTTCACGCTGAGCAGGGTGACACAGACTCTTCGGGCGATCCTGGCGGGCTGCCGGTGCTCCAGCAGCTCGGTCTGGACCAAAACTCTGACTTCTCTGACTCCAGCGTGCAGCAGTGCCTGGACGAGCACCGCGAGAGGATCCGCAGGGAGATCCGCCGGGAGCTGAAGATCAAGGAGGGGGCTGAGAACCTGCGCCGGGCCACCACCGACAAGAGGAACGCCCAGCAGGTGGACTCGCAGCTCCGCAGCTCCACGCGCAAGCTGGAGTCCCTCCACGCTCAGCTGCAGGAGCTGGACGCACACATCGTCGTCAAGGGCCCCGATGACAACAAAGATGCCCCGAAGTCTCCGGACGCGCTCAACCGGACGTCGGCCAACCAGCGGCGCATCGCAGCTCTGGAGCGCCAGCTAAACATCGAGCTCAAAGTCAAACAGGGAGCCGAGAACATGATCCCAATCTATGCCAACGGAGTCACAAAGGACAAGAAGCTTCTCCAGACGACTCAGCAGATGCTGCAGGACAGCAAGACCAAGATCGACATCATCCGCATGCAGGTCCGGAAGGCCATGCAGGCCACGGAGCAGTCCGAGGACAACCAAAGTAAGCATGACGGGGTGGAGCTGCGCGTGGAGGAGCTGTGGCATCACTACCGCGTGGAGCACGCCATGGCCGAGGGCGCCAAGAACATGCTGCGCCTGCTGGGAGCCGGGAAGGTCCAGGACAAGAAGGCCATAGCTGAGgctCAGTGCGGTCTGAGCGAGTCCTCCCAGCGCCTGGACCTGGTGCGCTGCTCTCTGGAGCAGCGCCTGCAGGAGCTGCCTGAGGACCATCCCAAGGCCTGCCTCATCAAGGAGGAGCTGGTGCtcgcctcctcctcggcttTCAGTGCCCGCCACAGCACCCCCTACGTCCACAACCAGTACAGCACCATGAGCAAGCCTTCACCACTCACagGTACTCTGCAGGTGCATCTCCTGGGCTGTGTGGGGTTGCTGGAGGTGATCCCGGGACGGACCAAAGGGAGCCCGCTGGTTCTTCCCTCGTACTCTCCGGGAGATGGACGCTCGTCCTTCAAACTGAGCGGCCTTTACAGCCGCAGCTCCAGCAGCATGAGCCTGAAGATCCCTGGCAAGACCGAGGAGCTCTCCTcgGAGGTGAGCGCCGTGCTGAAGCTGGAGAACACCGTGGTGGGTCAGACGGTGTGGAGGACGGTCGGGGAGCAGGCCTGGGACCAGAGCTTCACTCTGGAGCTGGAGAGATCCAGGGAGATGGAGATCGCAGTGTACTGGAGAGATTACCGCTCCCTGTGCGCTCTGAAGTACCTGAAGCTGGAAGAGTTCCTGGACAACCAACGGCACCGAGTCCAGCTGGAGCTGGAGCCACAGGGGCTGCTGCTGGCCGAGGTGACTTTCTTTAACCCGGTAATAGAGAGAGGCCGAAAACTCCAGAGGCAGAAGAAAGTCTTCTCCAAGCAGCACGGGAAAGCCTTCGTGCGTGCTCGTCAGATGAATGTGGACATCGCTACCTGGGTCCGCCTGCTCAGGAACGCCATTCCCAGTGGCAGCAACACACCGTCCTACACGCCCAGCTTCACCAGCAGCACGCTCACACACAGCGCAGGAGAAATCTCCGTGGAGAAGTTGAATCTGGGCAGCGACTCTCCCCCCAAAGCTGATATCCGGAGAGATGTGGTGGACGCACCGGCTTCCttgGAACAGATGGCGGTCATTGAACCCCCGTCCACGCCGGACGCCGCTCTTCACCAGCAGCCAACCAGATCGCTGTCCCAGAACTCTATACGCAgACCAAGCAGAGGCCCTCTCTGCCTTCAGGACTTCAAGCTGATAGCAGTGCTCGGCAGAGGCCACTTTGGGAAGGTGTTGCTGTCAGAGTACAAAAGGACAGCCAGTTTAAGTGTCTCCTTCGCCCCCATCCTCCCTCCCCCACCGCCCCCCCTGTCTGTCTCCAGTCTGATGTGTGAGAAGCGGATCTTTGAGGCCGTCAACGGCTCCCACCACCCCTTCCTGGTCAACCTGTTTGCATGTTTCCAGACGCCAGAACATGTGTGTTTTGTCATGGAGTACACAGCGGGAGGAGACCTCATGATGCACATACATGCCGACGTCTTTTCTGAGCCACGCGCTGTCTTCTACTCGGCTTGTGTGGTCCTGGGTCTGCAGTTCCTTCATGACCATAAGATTGTGTATCGGGATCTTAAATTGGACAACCTGCTGCTCGACACAGAGGGTTTTGTGAAGATAGCAGACTTTGGGCTCTGTAAAGAAGGCATGGGCTATGGGGACCGGACCAGCACCTTCTGTGGGACCCCAGAGTTTCTGGCCCCGGAGGTGCTGACAGACACATCGTACACACGGGCAGTGGACTGGTGGGGGCTCGGGGTGCTCGTCTACGAGATGTTGGTCGGGGAGTCTCCGTTCCCAGGTGACGATGAGGAGGAGGTTTTCGACAGCATCGTGAACGATGAAGTGCGCTACCCTCGCTTCCTCTCCACCGAAGCCATCGGCATAATGAGACGGGTTAGACTCCaaaaataaaaaactacgGGCTCTGGAGAAAAGGATGCTGAAGATGTCAAAAAACAACCGTTTTTCAGGGGCATGGACTGGGAGGCTCTTCTTCAGAGGAAGGTCCCGCCCCCGTTCGTCCCGACCATCGGAGGAAAAGAAGACGTCAGCAACTTTGACGTGGAGTTCACGGCCGAGGCTCCCGCCCTGACGCCCCCCCGCGAGCGCCGCAACCTCTCCCGCAAGGAACAGGATTACTTCAAGGATTTTGACTACGTCTCAGACCTCTGTTAGAGTCCCATGGGTCACAGGGGGGTCAGCCACAGACTCTGAGAGGAGACTGAGAAGCGAAAGGCGGCTGACTCTCTGCCCCCACAACCTGGGAGAGAGGAACTCAATGGTGATGAGAGGCGATGATCACTCCTTAactgttctttgtttttaatctctccgtctgtttgtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204612 lncRNA upstream 1690 2399900 ~ 2644136 (+) True G151077
TU204665 lncRNA upstream 13772 2585422 ~ 2632054 (+) True G151100
TU204653 lncRNA upstream 155690 2474896 ~ 2490136 (+) True G151093
TU204634 lncRNA upstream 221072 2424436 ~ 2424754 (+) True G151084
XR_005641922.1 lncRNA upstream 221863 2423194 ~ 2423963 (+) True LOC120574898
TU204672 lncRNA downstream 77 2691637 ~ 2692769 (+) False G151104
TU204673 lncRNA downstream 77 2691637 ~ 2692769 (+) True G151104
TU204675 lncRNA downstream 77 2691637 ~ 2692769 (+) False G151104
TU204688 lncRNA downstream 37184 2728744 ~ 2729495 (+) True G151112
TU204721 lncRNA downstream 245924 2937484 ~ 2944611 (+) False G151130
XM_039824508.1 mRNA upstream 64528 2520715 ~ 2581298 (+) True wu:fb95e10
XM_039824509.1 mRNA upstream 64528 2528840 ~ 2581298 (+) False wu:fb95e10
XM_039825281.1 mRNA upstream 151907 2461243 ~ 2493919 (+) True LOC120574835
XM_039825282.1 mRNA upstream 151907 2461243 ~ 2493919 (+) False LOC120574835
XM_039823730.1 mRNA upstream 186577 2453750 ~ 2459249 (+) True trappc5
XM_039824140.1 mRNA downstream 7366 2698926 ~ 2733225 (+) True engl
XM_039824141.1 mRNA downstream 7367 2698927 ~ 2733225 (+) False engl
XM_039824143.1 mRNA downstream 8630 2700190 ~ 2733225 (+) False engl
XM_039825981.1 mRNA downstream 78809 2770369 ~ 2783645 (+) True si:ch211-106h11.1
XM_039824002.1 mRNA downstream 96055 2787615 ~ 2798867 (+) True ddx39ab
TU204409 other upstream 428827 2148731 ~ 2216999 (+) False G150960
TU204412 other upstream 428827 2148731 ~ 2216999 (+) False G150960
TU204407 other upstream 481465 2148731 ~ 2164361 (+) False G150960
TU204406 other upstream 490978 2148731 ~ 2154848 (+) False G150960
TU204708 other downstream 107909 2799469 ~ 2802221 (+) True G151122
TU204936 other downstream 310339 3001899 ~ 3003364 (+) True G151240
TU205031 other downstream 454944 3146504 ~ 3147977 (+) True G151315
XR_005642000.1 other downstream 689727 3381287 ~ 3381386 (+) True LOC120575509
XR_005642001.1 other downstream 690954 3382514 ~ 3382613 (+) True LOC120575510

Expression Profile