RNA id: XR_005641922.1


Basic Information

Item Value
RNA id XR_005641922.1
length 232
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id LOC120574898
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2423194 ~ 2423963 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaggagactgaaggcaggacacattcagaaaccatatctcactcagaacaccatggatgACACCTCTCTGGAAAACATCTGTCATGCTTATCAGTGGGGCCTCGAGACAAGTAGCGGGCTGGACCTTTTGGATGACTGCCACACACCACAGGGTCAGGACCAGACCGGGAGAGATTGCTTTGTTGATTCTTTACGTTACGAGCAACGGGCTGCTGGTAGCCGAGCAGACTG

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204593 lncRNA upstream 23775 2399010 ~ 2399419 (+) True G151076
TU204568 lncRNA upstream 25800 2336034 ~ 2397394 (+) True G151054
TU204634 lncRNA downstream 473 2424436 ~ 2424754 (+) True G151084
TU204653 lncRNA downstream 50933 2474896 ~ 2490136 (+) True G151093
TU204665 lncRNA downstream 161459 2585422 ~ 2632054 (+) True G151100
TU204674 lncRNA downstream 193953 2617916 ~ 2692769 (+) False G151104
TU204679 lncRNA downstream 213826 2637789 ~ 2929730 (+) True G151106
XM_039825806.1 mRNA upstream 304071 2091477 ~ 2119123 (+) True LOC120575157
XM_039823746.1 mRNA upstream 646623 1769076 ~ 1776571 (+) False LOC120573865
XM_039823745.1 mRNA upstream 646625 1769076 ~ 1776569 (+) False LOC120573865
XM_039823747.1 mRNA upstream 647900 1767641 ~ 1775294 (+) True LOC120573865
XM_039825098.1 mRNA upstream 925094 1485594 ~ 1498100 (+) True jmjd8
XM_039823730.1 mRNA downstream 29787 2453750 ~ 2459249 (+) True trappc5
XM_039825281.1 mRNA downstream 37280 2461243 ~ 2493919 (+) True LOC120574835
XM_039825282.1 mRNA downstream 37280 2461243 ~ 2493919 (+) False LOC120574835
XM_039824508.1 mRNA downstream 96752 2520715 ~ 2581298 (+) True wu:fb95e10
XM_039824509.1 mRNA downstream 104877 2528840 ~ 2581298 (+) False wu:fb95e10
TU204409 other upstream 206195 2148731 ~ 2216999 (+) False G150960
TU204412 other upstream 206195 2148731 ~ 2216999 (+) False G150960
TU204407 other upstream 258833 2148731 ~ 2164361 (+) False G150960
TU204406 other upstream 268346 2148731 ~ 2154848 (+) False G150960
TU204682 other downstream 261140 2685103 ~ 2689038 (+) False LOC120574078
TU204669 other downstream 265757 2689720 ~ 2691562 (+) False LOC120574078
TU204708 other downstream 375506 2799469 ~ 2802221 (+) True G151122
TU204936 other downstream 577936 3001899 ~ 3003364 (+) True G151240
TU205031 other downstream 722541 3146504 ~ 3147977 (+) True G151315

Expression Profile