RNA id: XM_039825806.1


Basic Information

Item Value
RNA id XM_039825806.1
length 1875
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC120575157
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2091477 ~ 2119123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGGCAGAATCAGCATGGCACGGCCAGCTCAGCGTGCTTTACGTGATGACGTCGGGTTGTGTTTTGACGTTCAGTGTCTCTGCTGCGCCGTCAACCTGAGTGGTAGGACAAGTGTTGTTGACCCACGTAACACAGACTCGTCTTCATCATGGCACTGAGAAGCGCTGTGGGTCGTCTCCTGGTCAACCCTCACAGATCATTAACCTTCCTCTCGGCTTCCAGAGCACACGGCACTGCGGCACCGGCCAGATGGGATGCAGAGAAGACTGAGCAGAAGTCTAAAGCACCGAAGGTCCAGTTCGACTGGCGCGATGCCCTGGACCTGGAGGGCCAGCTGACGGAGGACGAGATCATGATTAGAGACTCTTTCCGCACCTACTGCCAAGAGAAGCTCATGCCTCGCATCATTATGGCAAACAGAAACGAAGtcttCCACAGAGAAATAGTGTCAGAGATGGGAGAGATGGGGGTCTTAGGCCCAACCATTAAAGGTTATGGCTGCGCTGGCACCAGCTACGTGGCCTACGGTTTGATCGCCAGAGAAGTAGAGCGAGTGGACAGCGGCTATCGCTCAGTCATGAGCGTGCAGTCATCCCTGGTCATGCACCCCATTAACGCCTACGGCACCGAGGAGCAGAAACAGAAGTACCTCCCCAAGCTGGCTCGCGGAGAGACTCTGGGCTGCTTCGGCTTGACCGAGCCGAACCACGGCAGCGACCCAGGCAGCATGGAAACCAGAGCCAAGTACAACCCATCCAGTCGCACCTACACTCTCACTGGCTCAAAGACCTGGATCACCAACTCCCCCGTGGCAGACATCGCTGTAGTCTGGGCCAAATGTGACGACGGAAAGATCCGCGGCTTCATCTTGGAGCGTGGCATGAAGGGCCTCTCGACGCCGAAGATCGAGGGGAAGTTCTCCCTGAGAGCCTCGGCCACGGGCATGATCGTCATGGACGAGGTGGAGGTTCCCGAGGAGAACCTGCTGCCTAAAGTCTCCGGCCTCGGGGGTCCTTTTGGCTGCCTGAACAACGCTCGTTACGGTATCGCCTGGGGCGCTCTCGGTGCTGCCGAGTTCTGTTTCCATGCAGCTCGACAGTACACACTCGACAGAATCCAGTTTGGCGTGCCGCTGGCAAGGAATCAGCTGATGCAGAAGAAGATGGCGGACATGCTGACTGAGATCACCATCGGCCTACAGTCCTGTCTGCAGCTGGGAAGACTAATCGATGCCAAAAAAGCGGCCCCGGACATGATCTCCATGCTGAAGAGGAACAGCTGCGGTAAAGCCCTGGACATCGCCAGGCAGGCCAGAGACATGCTGGGAGGAAACGGCATCGCCGACGAGTACCACATCATTCGCCACGTCATGAACCTGGAGGCCGTCAACACGTACGAAGGTACCCACGATATCCACGCTCTGATCCTGGGCCGAGCCATCACAGGACTGCAGGCCTTCACTGTGGACAAATAGACCCCAACAACACAAACCTGCTCTCAGAAATACTGAGTCACGAGTCAACGCTGCTGCAGTTTGAAGATTGAAGATTTGAAGAATAAATTCTCATCTGTATAGTGACGTTGTTTGTTACCAATCAGCTTTCTagaacacatatatatatatatatatatatatatatccgaGTGCTTTATTGTGAGAGAAAGAAGCAAGTGTCTGAACTTGGTGACTTTTGCAAAGTGTAATTAATTCAGAAGTTGATTTTTCAACTTAAAAAGGGCTATTTTTGATACTCTTACTCAGAAATTTCTTCTCAGAGTTGTATAGAAAAAGTCAAATCCATTGTTGATACTGTTATTATGAAACATAAAACAGCATAAATGCACTACACTTGTTTTGGGATTGCATGTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00252 GCDH, gcdH; glutaryl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204355 lncRNA upstream 18698 2008932 ~ 2072779 (+) True G150926
TU204375 lncRNA upstream 20766 2069793 ~ 2070711 (+) True G150942
TU204371 lncRNA upstream 32005 2058960 ~ 2059472 (+) True G150940
TU204312 lncRNA upstream 69199 2003422 ~ 2022278 (+) True G150902
TU204302 lncRNA upstream 76409 1971041 ~ 2015068 (+) True G150894
TU204386 lncRNA downstream 2214 2121337 ~ 2121669 (+) True G150948
TU204387 lncRNA downstream 2214 2121337 ~ 2121669 (+) False G150948
TU204399 lncRNA downstream 26209 2145332 ~ 2147026 (+) True G150958
TU204416 lncRNA downstream 37506 2156629 ~ 2157905 (+) True G150962
TU204425 lncRNA downstream 51934 2171057 ~ 2174214 (+) True G150966
XM_039823746.1 mRNA upstream 314906 1769076 ~ 1776571 (+) False LOC120573865
XM_039823745.1 mRNA upstream 314908 1769076 ~ 1776569 (+) False LOC120573865
XM_039823747.1 mRNA upstream 316183 1767641 ~ 1775294 (+) True LOC120573865
XM_039825098.1 mRNA upstream 593377 1485594 ~ 1498100 (+) True jmjd8
XM_039823695.1 mRNA upstream 671579 1402982 ~ 1419898 (+) True LOC120573834
XM_039823730.1 mRNA downstream 334627 2453750 ~ 2459249 (+) True trappc5
XM_039825281.1 mRNA downstream 342120 2461243 ~ 2493919 (+) True LOC120574835
XM_039825282.1 mRNA downstream 342120 2461243 ~ 2493919 (+) False LOC120574835
XM_039824508.1 mRNA downstream 401592 2520715 ~ 2581298 (+) True wu:fb95e10
XM_039824509.1 mRNA downstream 409717 2528840 ~ 2581298 (+) False wu:fb95e10
TU204330 other upstream 23829 1936920 ~ 2067648 (+) True G150905
TU204182 other upstream 322583 1761280 ~ 1768894 (+) True G150804
TU203548 other upstream 766377 1324062 ~ 1325100 (+) False G150386
TU203550 other upstream 766377 1324062 ~ 1325100 (+) True G150386
TU203663 other upstream 790719 1295618 ~ 1300758 (+) True G150465
TU204401 other downstream 29608 2148731 ~ 2164361 (+) True G150960
TU204402 other downstream 29608 2148731 ~ 2216999 (+) False G150960
TU204406 other downstream 29608 2148731 ~ 2154848 (+) False G150960
TU204407 other downstream 29608 2148731 ~ 2164361 (+) False G150960
TU204409 other downstream 29608 2148731 ~ 2216999 (+) False G150960

Expression Profile