RNA id: XM_039824508.1


Basic Information

Item Value
RNA id XM_039824508.1
length 5721
RNA type mRNA
GC content 0.57
exon number 9
gene id wu:fb95e10
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2520715 ~ 2581298 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtactgaagCGTCAttctcctcctttcttcttttcagTGAACGCGCATCACTTGTGAGAAACGAAGAGCTTGGCTTGTTGAGAGACCCAGAAGTTTCTCGGCTCGGCACGGCACGGCACGCTCTCCCGCGAATTTCTTCGGTTCCTCCACCCTCccggtttcatttttttttatcctcatcctcactttctttttttcccagacTCGAGGTTTCAGTCGGGGTGTGCGCTGCTCGACACTGGGCGTAGCTGGGAGAGGATTTTGCTAGCTCGCCGCTGCACTGATTGACTGACCAGACCCTGCTGTCTCCACAACGCCTGTAGACCTGTGGCCACCTTGTGAGACTGAAGTCAGCCCTGCTGTGCAGAGACGGACCACTACCACTCAAGGGGAGATGAAGCCGGATGGGGTTTCCACGGCAGCGCTGGGGCCAATGGAAACATTGGAATCCAACCTAGTAAATGAGGCAGCACCAGCCGTAGGACAGGAGCCCAACCAGGCAGCCAGTCCGGCGGAGGAGGGGATGCCACAGCAGCCCGTAGGAGAGCCTGGTCAGCTGGAGCCCCAGCCAGACCAGACCAAGGAAACCCCCGCTGCAAAGCCCTGTAACGAGCCTTCGGGAGACTCCAAAGCCAAGACTACCAACAAGGCCACGGCCAAGACAAAGCCTGGCCCCACCAGCCCAACCAAGACCGCATCGCGGCCCAACACGTCCCAGAGCCGCCTCTCAAACGGCACGTCCAAGCCCCAGACCAACGGAGTGGCTAAGAAGACCgcgcctgctgctgctgctgcggtcAAAAAGAGCACCCAGACGCCAGCTCTGTCCAAAAAACCAACAACCACGACCACGGTCCCAGCCTCCAAGAGCAAAGTGGGTGAGAAGAAAGCCACAGGGGCCGCCACCGCCCCTGCCACCAATGGCGCAAAGTCGATGACCGGAACAACGGCAGCCAAGAAGACCGCACCCGCAACTGCTAATGGTGTCAAAACCAGCACCAGCAGCTCTGCAGCTGCTGCTAAAAAGGCCCCAGCTCCCAAGACTGCCTCTGCAACTCCCACCAAGCCTAGCTCTGCTGCCTCGCCCAAGCCCGCAGTTTCCAAGACAACCAGGCCTCCAATTGGCTCGGCACCATCATCTCGTCCTGCCACAGGTGCGACCCGGCCGCCCACTGGCAGCGCAGCCAAGAGCTCCCCAGCTGCAGCCAAACCTGCTGCCCCTAAAAACCCCTACACCGCCTCCGTCAAGCCGGCCGCCTCCAAACTTACCTCCACTACCCCATCTGGTGGCAAACCTCCAGCGTCACAAACATCCAGAAATGTAACCCCTGTGaagaaagATGTTACCAAACCAGCCACTTCAGCATCCAAAAAGCCTGCAGATTCCCCCCTTACTCGCCCTTCCGCTGCAATGAAGTCGGCAAAACCTGACACCCCCAAATCAGCCTCAAAATCAGACGTTGCCTCCAAAAAGCCTGCTGCGAGTAAGGCTGCAGATACAAAGACACCCACCCGCTCCAAAACAGACAGTAAGCCCACACCTTCCAAGACCCCTGGCTCCAAAACAGCTTCAGCCAAGGCCTCCACCCCCAAGAAAACTGTGGGCAGCAGCACCCCAACTCCAGTGAAACGTGGCCCCAAAGCTGAAAATGTTGCAGAAGCAGGAAAGGAAATAGCTGCTGCTGTAGCTACCGCGGCGGCCATCGCTACTGCAGCAGCTACCATCGCCGGACCAGAGgtaccagaaccagaaccagaagctGTGGAGAAATCCGCTGCAGATGATGCACCAGAACTGATCTCCAGCCAGACAGAAGCAGTCCAAGAGAAAACTTCAGACCCCACACCAGAACCAGTGTTGGAACTAACACCAGAGCCTGTTCGGGAACTAACACCAGAACCTGTACGGGAACTAACTCCAGAACCTGTACGGGAACTAACTCCAGAGCCTGTTCGGGAACCGACACCAGAACCTGTACGGGAACTAACTCCAGAGCCTGTTCGGGAACTAACTCCAGAGCCTGTTCGGGAACTAACTCCAGAGCCTGTTCGGGAACCGACACCAGAACCTGTACGGGAACTAACTCCAGAGCCTGTTCGGGAACCAAGTCCAGACCAACTACGAGAAACATCTCCCGAGCCTCTCCCAGAGCCGCTGTCTCAGTCATCAGCGGATCCTGATCTCGGAGCTGAACCAGTGTATGAAGACGAGTCCAGCGCTCAGCTGTCGGCTCAGCTGGACCTCTTCACGTTCCAGGACTCTGCCAGGGACTCCCTGGGAACTACGGTCATGTCTCCTCCTTGCTCTCCACAGGGCCCAGTTTCCCCCGTCAGAGACAGGAACCTGTCTGACTTTGCTCCCCAGAGCCTCGTCAACGCGATAAACTTCGACACCGAAGAGGAAACGGAGAAGAAAAACCAGTTTGAGGCTCAGAAGAccagggaggaggaagaggaggaggacgaagaagaagaagaagaagaagaagaagagaaggataACTTGTGTATGCCTGCCTCCACAGCTCCATCTGCAGAGGCCTATAACATGATGACACATCCTCACGATTTCCCCCCAAGGGACCTGATGTCCCCGCACgaaaaggagaaagaggaggccGTGGAGAAGGCTGACGAAGAGATAAACGAGGACCACGATGAcgagccctatgacGAGGACTACGAAGACGAGGAGCAGAGGAGGCTAGGCCACCAGCCGCTGTCCTTCGCCACCGACATGAGCACGTCTCAGCCCTCCGAGGAGCTCCAGGCCAGGGCCTTCGGCGGCTCGGCAGGTTGGCACGGCGACGACCAGCTGTCCGGCATGGACTCGGAGGACGTGAGCAGCTGCGGCAGCAGCAGCCGGCAGCACGGTGTGTCGGACCTGAGCAGCACGCAGCACACGGCGCTGCTGGAGGGCACCCAGAGCTCGGACGCCCTCGTGGGAGACGCGAACGTCATGGGCTCGCCCAACGTGGAAACGCTGGCCAACGAGGAAGAGGAAGACGAGGAAGACGAGGACGAGCGGGTGGACGATATGGACCTGAGTTCAGAGAGAGTGGAGGAGCATCACAAGGTGTTCCAGCAGCGGGAGCGATACGAAGACGACGAAGACGAAGACGTAGAGATGCACAGCGAAGGAGTGACCGAGAGCGCCGGGAACGTAGACGACGACGACTTCAACGAGGAGGAGCGTTTAGACAACCTAAACCGCGCCGGTCCTCAGCCCTGCGCCCCCCTTGCCTCCTCCTGGGACCAGACCAACCCCTTCTGTGACCCCTGGGCTCAACCGGCCTCGCCGCTCGCCACCGCGGCGGCCTCCTCCCCCAGCCCAGTCTCTGACCACGGCGCGGCCGAGTCCGAGACGCCCATCCTGTCTCCCGCCCTGGCACGCTTGGACGCCGGCGCGCCTTCCTTCGCTCCTCAGTCAGAGCGCGAGTCGGCACACGACgagccctacgaGGAGGCTGACGAGGCTCGCGTCCTGTTCGCTGCTGGCCCCGCTGTCGGCTCGTCCCAGCCCGGCGCCGCCACCGCCGGCGCCGCTGCTCCGGGCGCCCACCACAGCGGCAGCGAGACGAGCACGCCGGAGGAGCTCCGCGACTACGACAGCAGCTCTGGCGTGGAGTCCCGTTCCGACAAACAGCAGACCCCGGTGCCGGCCTCGCTCCAGCCCGACGTGGAGCAGGACCTGGGGATCCACCTGGAGAAAGGCgacggagaggaggaagaggccgAGACGCTCCCGGCCGACGAGGTCCCGGGAACCGGACCTCCGACCGCGCCGGCGTCCGCGCCCACTTCCGCGTCCACCTCGGGCGACGAGGCCAGCGACACCGAGGGAGAGATGCAGATAAACGACCCCGACGCGGCGCCGGCGATGATAGACGACTGCGCCGGCTTCGACAGCCCCACGAAAACCCCCACCCGCAGTCTGCCGGCGCTCGAGGAAGACGACGAGGCCGCCGGGTACGCGCACGCCGGGTACGCCGAGGAAGACGGCGGCGGCACCACGCCGCAGTCGGCCAACTCCGTGGCGTCCTACGGCTTCGACTGCACCACGTCCAACTCCAACGCCCACTCCGTGGCCGAGAGCTGCGGGAAGAGCCCCGGTATCTTCTCGCTGGAGAACGAAGAGCAGCTGCCAGACGAAGCCAAGGACCCCTCCCTCATCAAGGAGCTCACGCTGCTGTCCGAGGCCAAGGACCCCTCCCTCATCAAGccctacatcaAGGATCTGACGCTGCCGACCGACGCCAAGGACCCCTCCCTGACCAAGGATCTGACGCTGGCCGCCCAGGCCGAGGACCTGCTGGGCAGACCGGTGGACCTGATGCCTTTGGGACACCCTGGAGACATCAAACCGAGCAGTCTAGACGAGCACCACTACATGTTCGGGGGAAAGATGGAGGCAGCAGACTACGCAGAGGACGACGAACCGTTGGAGCCCGGTCAGCGCCTCGTTGGCGTGGAATCTGGAGATCCCGGCGACAGCCAGCCGCCCTACTACTCCACCTCCACCATATGTGATAAGACTGATAGTTTTCTGGCAGGTAATGTATAAGTCCACTCCTATTACCCCCCTGGAATGCACCTTTACCCCCGCAACCTTCCCCCCTTCTGTTACCTgttgtctgttttctctccagtTGGGTTAGATGGCTTAGAAGAAGAAAGGGGGGGAAAGAGGAGAGCAAGATTGTAGAAAAAATATGGAGATGGGGGacgaaaaaaaatgaaatgactgTAGCAATTTTTAAATGAAGCCTCTCTCTTTCATACTGTTACCGGTCATGGTTATGAGTGTATGGCTTAAACTCCTTTTATGTACAATAGCTACTACCGATTTCTAGTAGAATGCTCTTTTTAAGTAACACTGCATATTTCTGTAGCCCCTGAATTTGGGGTATTGACATTGACTGATTGGTCCAACTGTGACTGAGCTTATAAAccgacaaaaaaacaacaacaaaaaaaaagaggacaacacacacacagatggaatGAAATGGACTCAATGTGTATTTATCCTACTGTTTTTACCGAACAAATGTCTGAACAGAagatttttttggttttgtatttgcttacttgtgttttttttttcgtttttctgTTGAAACCTGGTCCTCCCTACCGTGTGTACACTTCATGTTCAACAGCACCTTAGCAGTAGTCACATGCTCCTTTTTTTTAGCGCTCAAAATAAGAACTAGATATGAATTAACACGGCAGATTTGTTGAGGTAGGTGTGGGAGTATTAGATTGCAGTTGGTGACGTTTTTTAATGTGTGCTTCAAGAGGCTCTGAGCTCTCCGCATCTACAGTAGGTCGTTATAACGTATATAACGTGCAGTCGCGTACAGTATGTGTTTCAGGCATTTGGGTTTTTAAGTGGCTTCAAGCCTCAGTTAGCTGATCATTTGTGTTCCAGAAAAGACGTAACAACTAGCCTTTTTATTGTGATGAGACCCTGCATTGTCCTACAGCGCTATCACAGTTGAGCTTTACACTCGCTTAAATCGTTTTCATAGTGAGCGATTGGCTTACTATTTCAACAGTATATTGCATGTTTAACTAACATAAAGACTGTGTACTACCTTGAAtttgaaacaattctacactagACATGTTCATCAATGAATGGTTCACGCTAGGTTATCTTTCAAAATTCCATTAAAACATCATTGCAAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204653 lncRNA upstream 30579 2474896 ~ 2490136 (+) True G151093
TU204634 lncRNA upstream 95961 2424436 ~ 2424754 (+) True G151084
XR_005641922.1 lncRNA upstream 96752 2423194 ~ 2423963 (+) True LOC120574898
TU204593 lncRNA upstream 121296 2399010 ~ 2399419 (+) True G151076
TU204578 lncRNA upstream 167163 2351851 ~ 2353552 (+) True G151063
TU204665 lncRNA downstream 4124 2585422 ~ 2632054 (+) True G151100
TU204674 lncRNA downstream 36618 2617916 ~ 2692769 (+) False G151104
TU204679 lncRNA downstream 56491 2637789 ~ 2929730 (+) True G151106
TU204672 lncRNA downstream 110339 2691637 ~ 2692769 (+) False G151104
TU204673 lncRNA downstream 110339 2691637 ~ 2692769 (+) True G151104
XM_039825281.1 mRNA upstream 26796 2461243 ~ 2493919 (+) True LOC120574835
XM_039825282.1 mRNA upstream 26796 2461243 ~ 2493919 (+) False LOC120574835
XM_039823730.1 mRNA upstream 61466 2453750 ~ 2459249 (+) True trappc5
XM_039825806.1 mRNA upstream 401592 2091477 ~ 2119123 (+) True LOC120575157
XM_039823746.1 mRNA upstream 744144 1769076 ~ 1776571 (+) False LOC120573865
XM_039824139.1 mRNA downstream 64528 2645826 ~ 2691560 (+) True LOC120574078
XM_039824140.1 mRNA downstream 117628 2698926 ~ 2733225 (+) True engl
XM_039824141.1 mRNA downstream 117629 2698927 ~ 2733225 (+) False engl
XM_039824143.1 mRNA downstream 118892 2700190 ~ 2733225 (+) False engl
XM_039825981.1 mRNA downstream 189071 2770369 ~ 2783645 (+) True si:ch211-106h11.1
TU204409 other upstream 303716 2148731 ~ 2216999 (+) False G150960
TU204412 other upstream 303716 2148731 ~ 2216999 (+) False G150960
TU204407 other upstream 356354 2148731 ~ 2164361 (+) False G150960
TU204406 other upstream 365867 2148731 ~ 2154848 (+) False G150960
TU204682 other downstream 103805 2685103 ~ 2689038 (+) False LOC120574078
TU204669 other downstream 108422 2689720 ~ 2691562 (+) False LOC120574078
TU204708 other downstream 218171 2799469 ~ 2802221 (+) True G151122
TU204936 other downstream 420601 3001899 ~ 3003364 (+) True G151240
TU205031 other downstream 565206 3146504 ~ 3147977 (+) True G151315

Expression Profile