RNA id: XM_039824141.1


Basic Information

Item Value
RNA id XM_039824141.1
length 4441
RNA type mRNA
GC content 0.52
exon number 17
gene id engl
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2698926 ~ 2733225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcagacacttagaataataatctgagcctgtcagcggtaAAACCAGCACtttagtgaaggtaaatacaagctggacagttGTCCTATTAACAAACGTGAATAATCTGACTGCAACAAATGGAGGCATGGCTGCAgtgtgtttttacttatttatttctcATACACACATTGAAAGTAGAGAAAAATGCAACATCTAAACTCAAGAAATATGGAAAATATGATCCATGGCATGTCTCAGAGAGTGTGTACCCTTGTTTACTTCCATCCCAAAACATTTCACCTGTCAGTCAAACTCCTGAGCTCTACCCTTGGATCACATGCAAAGTAAGTGTGCCAAAAAATGGAGGCATGGCTGCaatgtgtttttgcttttaattatttgtaagatcaccagaatcagaatcagaaaaaagatttattgccattgccacaataagttgcacttatgtggaatttgccttggtggttggtgcatcCATAAACAActaacatattaaacattaatatgaaataaacaataaatacagaaacaaatatatacaaaatagctgttttgCATAAGAAGGAGGCTGAATGGAttgagtgcagaatgtgcaGTGATCCCCTTgattgaaaagaaagaaaaaagcaacatctAAACTCAGAAATATGGAAAATATGTCCTTAATATCTCAGAAAGTGTGTTGCACTTCCCTCCTAAAACATTTCACCTGCCAGTCAAACTTCTGACCAaactccatccctcctccttccctcctatgtcccctcctcctctcccaccTTCCCTTctcttccctccttctctccctccttctctccctcctccttccctccctcttcacttctctccctccattcctcctccttccctccctccctccttcctgttGCCATCTACGTTCCCAAAGCCTTTTATTCCTCTCCATCtcgccatctctctctccactctgtCACACCATCCCGCAGTCCCTCCCATTTGCCCCTGTTTAATTGTGTCTTTAGGCCTACAACTACCCCCCACGCCCACCCCTCCCTTTCAGTCCCACTCGGTGTGTTAAAATGAATTTCCACTGAGAAATATTTCCCACAAGTCGCACCTCCGCTGGAGAAAGACGTCTGACGCAACCCGCGAGTATTTTGTTGCGTGGTTCAcacgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgcatgGTCGTGTGTTGAGGAAATGAGGGGGGCGTGTGTTGAGCTGGGAGTGCAGCCCGGCCCCCTCacagggaagcccgggagagcAACAGCTGGATCAGCAGTCCGCCTGTCCCTCCGCGCAGAGCCGCAGGATGTAAGAGGGGACGTCCCGTTAAGTCAGTGTAGTGGTGAAATGTTGATGATGTCTTCGCTGCCAGGGGTTGGATGGACTGTTCTCTGTCTCCTTCTGCTCTGGAAGAGAACGGCAGCTCAAGGTGTGGAGGTGCGATGCTCCGTGGCACCGGTGGGGGGGCTGCACCCTGTTCGCGGTCTGCTGGAGAGGTTCGAGGCGGGTCCTGGCTGCGCTGCCAGAGAACGAGGAAACAAGGAAACTCACGTCATTGCAGTGAGGAGAGTAACAAACAGCCCCGAAAACAAGGTGACAGTGTTGCTGAAGCCTTTGTTTCTGCACCCCTCACCTCTCAGAGCCGTCCACCTGCTGCTCAGCTCCAGGCTCCCCGTCACCTGGTGGCTGCAGGCGGAGAGACTGCCCCCCCACCTCCCCGTGCTGGTGCAGGTATCCTCAAACTCCAGCGTGCAGTCCCACACCCTGCGTCTGGATGTCCGGACGGTGCATTCGCTGCCTTTTCGTCCACGTGCGCTGCACCGCTGGGCTCTGAGACACCACGGCAACCTGTCCTCTCTGACATACATGCCACACGGCAACCGAGTCTACGTCCAACTGGGAGAGGATCCAACGCTGCCTGCTGTGTGCCAGCTGCAGTCCATGTTCCTCTCTCCCAATTACATGACCTCGGAGCTGCAGCCGCAGGAAGTGCAGGGCTGCGCTCACGTATCAGCGGGTGGGATCAGCCCTGAAGTCCATGTGATCAAGCTGCATTCAGCGGGCTCCGGGCTCTGTGGCTCTCTCCAGGTGGAGGTGATCATCTCTCTTGTGCCCCTGGTGGCTTCAAAGATCCAGACGGTTGTTCTGATCCTCAGCAGCTCTGTGCCGGTCAACTGGGCCATCGTTGCTCCAGGTGTCCGGGGTCATGTCTCTGTTCATtccTCCAACAGTGTATCCCCACCTTACCCCCCTGAGCCTGGCCTGTACCTGTCCAGTACTCTGAACTCTGACCTGTCCACAACATCTGACCTTCTTGTGTGGGCCAATGAGAGCGGCTACACCAAGGTGACCTCATACACCGAGGCTGACCTGGCCAATCGCTTTGTGATCCAGCTGGCTGGGGGCAGGACAGGCGTGGCCGCGGGGGTGAATCCGCTGGTTGGGAGGCCTCCGTGGGCCGAGGAGCGCAGGCTGAGGCAGTGGCTGAACGGAGGAGGCAGACCAGGGGAAGGCCGACAGAGTTTCACGGTGCAGTGTGAGGACGGACGCCTCAGCGTGAGCGTAGACCAACACATCCTGCAGAGCTTGTCTGTCCCGGTGGCTGCCGTGACTCTACGAGACGCAACGTGCCAGGCTCAGTCCAATGGAAGTCATTTCCTGTTGGTGTTTCCAGTCATTTCCTGTGGCACTGAGGGTCTGCTCCTGGGACAGCCTCGAAGGGTGAAGTACAAAAACATGGTGTTATTATGGAGAGACGAGCCTCAGGCCATTCTGGCGCTCAATGAGACAGAAATGAAGTCCAAAAATCCACTCGCCGTACATTTCAGCTGTTCGTCTGAAGTCCCCGCTCTGCCTGGATCTGCCGACAGTGATGATGTCGATGTAAACAGTCCTCAGGCGGGGCTGCTCCCCTGGGCACCCGAAGGTCCGGGGCCTGATCCAGGACTGAGCCACCTACCGACACCCAGACACAGATCCGGGCCTGTTCTTATTTTGAGGCTCTTTGTCACCGAGAGCTACGAGCAGAAGCGGATCGGCCCCTGTGTCATAACTGCAGACCAACGTGTCTatgttgagATTTCAGCCAAAGGGCCTTTCATCGATGTCGTGGAAGTGAAGTCATGCGTGGTCTCTCCTCAGTCAGACCCCAAAAAGTCTCCTTTCTGGACTGTCATAAGCGGCGGCTGCTCCTCGGACCCCTCCCTGGCCCTCGTGGGAAACGCAACAGACGAAGAGGACGAAGAGGCCAAAAGTGATGCTGAAGTggaagaggaaaaggaagagACAGATGGACCGGAGAAAGGCAGAGATGTCTCATTCCGACATAGTGTTGAGAGAAGATGGAGAGAAGCACTAGAAAGGATGGAAAAAAGGAGCACAGAtgtgggagaggaggaggaggaaatacAGCCGTTGAGATTTAGTTTCACCCTGCGACCTGTTTTTAATAACTCAATTCAGTTCCTACACTGCAGCCTTCGCCTGTGTATCTCTGACTCGAAAAGAGGGGAACCCACGAAGGAAGCTGTAAAGAATGACTGTCAGAGTGGGCTACGTATCCCTCCACTTGTATCTAGATCCCCCGGACATCAGTGTGAGATCAGAAACCTATCCAGGCCCATGGTGGTCACCCAGCCGATTAGTTCACTAGTACCCAAACTGCTGAGGCCCCCCGCTGGCCCAAGAACCAAGAGCCTGAGCACCTCCCGACTGAACAGTCCAGACCCACAGCACAGCAGTGCTGTGGTACAGACAGGACCAGTGATGGGAATTGTCTTTGCTGCCTTTGTGATGGGTGTCTGTCTGATGGGGGGGCTGTGGTGCATCTATCATTATACAGGGCCAAGTACAGCGACGCCACGTACAGCGACACTTGGAGAAGAAAGTCATTTAACAGACACACGCGCCCATGAAGGCGGCAACATCTGGAATCCCCAGTTACCGTCGGATCAGTCGTCCAGCTCGGTGTAGAGGATTTCCTGCAAATCAGAGGAAGGAGAACTGggacagcttgtgtgtgtgcagagccaATGTTTGTGCACGTCTCCTCCATCGTTCATCGCTGTGTTATAGAAATGCGAGGGGACTGAAACTTGACTCCTAAAGTCACTACCGGGAAATGTAATCTTCGATCATATGGGCAAATCATGTATGACAGGGGGGTCagactcaacttcccagagggccatcCTGGAAAAttagaatcacaccaagggccagacatgtttagtttatcgATAGGCTTTGTGTCATAtggtcttctcacttacagttcggtcgacataaagtcctaaagaagtcaggagaaACTTCCTCGgccatcatagaaaagaagcgcccaaaaatgtcaaaaaaaatgacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204674 lncRNA upstream 6158 2617916 ~ 2692769 (+) False G151104
TU204672 lncRNA upstream 6158 2691637 ~ 2692769 (+) False G151104
TU204673 lncRNA upstream 6158 2691637 ~ 2692769 (+) True G151104
TU204675 lncRNA upstream 6158 2691637 ~ 2692769 (+) False G151104
TU204665 lncRNA upstream 66873 2585422 ~ 2632054 (+) True G151100
TU204721 lncRNA downstream 204259 2937484 ~ 2944611 (+) False G151130
TU204726 lncRNA downstream 207384 2940609 ~ 2941036 (+) True G151131
TU204724 lncRNA downstream 209035 2942260 ~ 2944611 (+) True G151130
TU204940 lncRNA downstream 263884 2997109 ~ 2997374 (+) True G151243
TU204941 lncRNA downstream 264832 2998057 ~ 2998259 (+) True G151244
XM_039824139.1 mRNA upstream 7367 2645826 ~ 2691560 (+) True LOC120574078
XM_039824508.1 mRNA upstream 117629 2520715 ~ 2581298 (+) True wu:fb95e10
XM_039824509.1 mRNA upstream 117629 2528840 ~ 2581298 (+) False wu:fb95e10
XM_039825281.1 mRNA upstream 205008 2461243 ~ 2493919 (+) True LOC120574835
XM_039825981.1 mRNA downstream 37144 2770369 ~ 2783645 (+) True si:ch211-106h11.1
XM_039824002.1 mRNA downstream 54390 2787615 ~ 2798867 (+) True ddx39ab
XM_039824005.1 mRNA downstream 110355 2843580 ~ 2861069 (+) True txn2
XM_039824161.1 mRNA downstream 140730 2873955 ~ 2928197 (+) True LOC120574089
XM_039824162.1 mRNA downstream 140730 2873955 ~ 2928197 (+) False LOC120574089
TU204669 other upstream 7365 2689720 ~ 2691562 (+) False LOC120574078
TU204682 other upstream 9889 2685103 ~ 2689038 (+) False LOC120574078
TU204409 other upstream 481928 2148731 ~ 2216999 (+) False G150960
TU204708 other downstream 66244 2799469 ~ 2802221 (+) True G151122
TU204936 other downstream 268674 3001899 ~ 3003364 (+) True G151240
TU205031 other downstream 413279 3146504 ~ 3147977 (+) True G151315
XR_005642000.1 other downstream 648062 3381287 ~ 3381386 (+) True LOC120575509
XR_005642001.1 other downstream 649289 3382514 ~ 3382613 (+) True LOC120575510

Expression Profile