LOC120543831 (clg10hxorf57,LOC103366308,LOC102289771)


Basic Information

Item Value
gene id LOC120543831
gene name clg10hxorf57,LOC103366308,LOC102289771
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24405115 ~ 24406976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228417
CGTCAGTGACGGTAACGTCGTAGCTGTAGCTGTCGAGCTGCTGCCCCTCGGTTTGCTCAGATAAGTACCGCTGAAGTGCAATTACAGCAACAGGAGCCGctgccgcctcctcctcctcagtgtTTACTTTCAGACGCTGTATGGAGGATAACCGCTCCAACGTCCTCTGGAGGAAAGACGCTTGAGAAAGACCAGTGACCACCGAAGAACAGGACGAGTTATCCTCCATTATGGACAGGACATCGTCCAGAGGCGATGTGCATGCAGAGGCTCTCCGTAGGCTACAACCTGAATGACTCCTCCCACAGACTGTTTGCCCCTCTGCAATTAAGCAGAAGATTTCACATCACCAGGACCAGCTCTGCGAGGTTCTGCAACAGTAGCCTACTTTTACAGATGAAACATTTGAAATGCAGAACTACTTTTAATAgaagatatttttttacattgtggaaTTAATACTTTTATGTTCTTCAACAACTAGTATTCCGTAATGTAACCAGGGtttaaaattaactttttcgtccaccagccaaatggctagtaaaTGCTCAAATTATACCAGCCACTCAGTAGAGTAccattgcttttttttggctggtgagtgaagcaaatctgccagccacttgcatattttaccagcatttggctggtagatggAACCCTGAATGTAACTAGTATATGCAAATGTTTAGTAAATGCAAACTACTACATGCAAAACTCAAATgttagtgtttttgtttattacaCAATATACCTTTCAAACTATTACAGCAGGTGTTCTTGATGACAGCTGGAGGAGCAGTAACATCAAATAGACATAGACAG
>TU228418
CGTCAGTGACGGTAACGTCGTAGCTGTAGCTGTCGAGCTGCTGCCCCTCGGTTTGCTCAGATAAGTACCGCTGAAGTGCAATTACAGCAACAGGAGCCGctgccgcctcctcctcctcagtgtTTACTTTCAGACGCTGTATGGAGGATAACCGCTCCAACGTCCTCTGGAGGAAAGACGCTTGAGAAAGACCAGTGACCACCGAAGAACAGGACGAGTTATCCTCCATTATGGACAGcatttctctctcctcttcatccaGGACATCGTCCAGAGGCGATGTGCATGCAGAGGCTCTCCGTAGGCTACAACCTGAATGACTCCTCCCACAGACTGTTTGCCCCTCTGCAATTAAGCAGAAGATTTCACATCACCAGGACCAGCTCTGCGAGGTTCTGCAACAGTAGCCTACTTTTACAGATGAAACATTTGAAATGCAGAACTACTTTTAATAgaagatatttttttacattgtggaaTTAATACTTTTATGTTCTTCAACAACTAGTATTCCGTAATGTAACCAGGGtttaaaattaactttttcgtccaccagccaaatggctagtaaaTGCTCAAATTATACCAGCCACTCAGTAGAGTAccattgcttttttttggctggtgagtgaagcaaatctgccagccacttgcatattttaccagcatttggctggtagatggAACCCTGAATGTAACTAGTATATGCAAATGTTTAGTAAATGCAAACTACTACATGCAAAACTCAAATgttagtgtttttgtttattacaCAATATACCTTTCAAACTATTACAGCAGGTGTTCTTGATGACAGCTGGAGGAGCAGTAACATCAAATAGACATAGACAG
>XR_005636401.1
cgcctcctcctcctcagtgtTTACTTTCAGACGCTGTATGGAGGATAACCGCTCCAACGTCCTCTGGAGGAAAGACGCTTGAGAAAGACCAGTGACCACCGAAGAACAGGACGAGTTATCCTCCATTATGGACAGcatttctctctcctcttcatccaGGACATCGTCCAGAGGCGATGTGCATGCAGAGGCTCTCCGTAGGCTACAACCTGAATGACTCCTCCCACAGACTGTTTGCCCCTCTGCAATTAAGCAGAAGATTTCACATCACCAGGACCAGCTCTGCGAGGTTCTGCAACAGTAGCCTACTTTTACAGATGAAACATTTGAAATGCAGAACTACTTTTAATAgaagatatttttttacattgtggaaTTAATACTTTTATGTTCTTCAACAACTAGTATTCCGTAATGTAACCAGGGtttaaaattaactttttcgtccaccagccaaatggctagtaaaTGCTCAAATTATACCAGCCACTCAGTAGAGTAccattgcttttttttggctggtgagtgaagcaaatctgccagccacttgcatattttaccagcatttggctggtagatggAACCCTGAATGTAACTAGTATATGCAAATGTTTAGTAAATGCAAACTACTACATGCAAAACTCAAATgttagtgtttttgtttattacaCAATATACCTTTCAAACTATTACAGCAGGTGTTCTTGATGACAGCTGGAGGAGCAGTAACATCAAATAGACATAGACAGTAGAATAAAGTGAATTTATTGCTACAATAAATCTATCTAATCAGTGTA

Function

NR:

description
PREDICTED: uncharacterized protein CXorf57 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228417 False 828 lncRNA 0.43 2 24405115 24406928
TU228418 True 852 lncRNA 0.43 2 24405115 24406928
XR_005636401.1 False 797 lncRNA 0.41 2 24405218 24406976

Neighbor

gene id symbol gene type direction distance location
npas2 LOC102290485,LOC102785237,LOC100691220 coding upstream 9715 24357247 ~ 24395400 (+)
LOC120544446 LOC104945802 coding upstream 71394 24326400 ~ 24333721 (+)
cnga2b cnga2 coding upstream 92576 24306651 ~ 24312539 (+)
pls3 pls3,LOC103366302,LOC107087894 coding upstream 102359 24285713 ~ 24302756 (+)
ccdc61 ccdc61 coding upstream 145159 24252561 ~ 24259956 (+)
amer1 LOC103370920,LOC104934356,LOC104946956 coding downstream 14434 24421410 ~ 24428317 (+)
zc3h12b zc3h12b,LOC102800093 coding downstream 22279 24429255 ~ 24438363 (+)
msna msn,LOC101079839,LOC104934336,LOC103395301,LOC102221775 coding downstream 44031 24451007 ~ 24468640 (+)
LOC120543986 LOC100174876 coding downstream 83709 24490685 ~ 24522633 (+)
gjb1a LOC101466165,LOC102776897,LOC100709641,LOC103366312,LOC104934306 coding downstream 148148 24555124 ~ 24559939 (+)
G168460 NA non-coding upstream 6486 24395442 ~ 24398629 (+)
G168383 NA non-coding upstream 176538 24225214 ~ 24228577 (+)
G168360 NA non-coding upstream 226576 24175177 ~ 24178539 (+)
G168318 NA non-coding upstream 311316 24090275 ~ 24093799 (+)
G168311 dscaml1,LOC107087877,LOC103395551,LOC106534979,LOC108247600,LOC105929366 non-coding upstream 371897 24032761 ~ 24033218 (+)
G168473 NA non-coding downstream 31593 24438569 ~ 24441195 (+)
G168512 NA non-coding downstream 115698 24522674 ~ 24523302 (+)
G168541 tbc1d8b non-coding downstream 164633 24571609 ~ 24575143 (+)
G168604 NA non-coding downstream 528027 24935003 ~ 24935594 (+)
G168672 NA non-coding downstream 827499 25234475 ~ 25237972 (+)
G168226 thoc2 other upstream 476634 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 486638 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1759289 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 1983061 22394516 ~ 22422054 (+)
kif20a kif20a,LOC102778170 other upstream 2260916 22134507 ~ 22144199 (+)
gab3 NA other downstream 3329 24410305 ~ 24420345 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 579489 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 1432428 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 1461178 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 1593087 26000063 ~ 26223445 (+)

Expression


Co-expression Network