G168541 (tbc1d8b)


Basic Information

Item Value
gene id G168541
gene name tbc1d8b
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24571609 ~ 24575143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228523
CGTCACTCTTTATTCTGATACCTTTGAATGgagatacaaaataaataaatcataatcAAGCAGGTAAACAGAAATATCTGTGCTTCGCATATTTTGCAAAACAAGCTTTTGATCAAAAGCTACAGGCTATACCAGCTGTAGACTACACTTGCACATCTAAGGACTTGATTAATCATATATTGATGCAGGAGCTGGAGAAGTATCCATGCCTACTTTATACACTCAGATGCTTAATGGCAAATCTGACAGCATGCCAGAGGGATGAAGATTTCCAAAATCAGATTTTCCTTCCTCTGTTCCAACAAAGTATCTCCTTTCATTTATATCCCCACCAAGCCGAAACCACTGGCTATTTGGAGCTAGAAAACATCATCTTAGGGGACTTTTTCCAAAAACTATGCCTAAAGAAATAGTTTGGACATTAGTGGGCATCACAAGGTTTGTTTTGTCTTAACCACTTTTCTACATGTCTTTCTCTATAAAGCCCAACAAATGAATTCTTGAGAGCCAAAATTTCTAATCTTAAAGATGTTATCAAATAGTCAGAAATAGACTAAGCAATAACATAAAATGAACTCAGAACCCTCACAGAAAGATTACAAGAGGTTGTAATTtgcatttaataataataataataataataataataataataataatttcatgACATTCAGAGACGTTAGAAATGCAGCATGAAACTGCCAGGGAACACCCATACTGAAATGGTCAGACCATGGTCAGAGATGATTGTTTTAAATAATGGAAATAGAGTTGCTGTTTTGAAAGGTTTCTGAGCTCTCCTGTTGAAACTCTGCCACTTCAGTAGTTTCATTATGGCTTTAGGTACTAGCCTGAAACCACAGATCGAGCTTTGGATTTAAGCAGTGACACATCAAAGATGAATGGGGTGTATTTTAATATTCTAACACTTCTAATGAATTACTAATagaattagtattagtattattatactaattattattattattagtcatcAGTGAGAAATTTGTCTATTCAGATTGAATGAGTAATGGGTGTTTGCAAAAAGCTTATTTTCAAAGAGTATGTAGAACTCACTTAAACAATCTATATATCAATTAACCCAATAATtacaaaatgaaatacatttcaGATTGGACCTTAAATCTTAAGTGAAACAGCAAATGgcaaaataaagacaaatatagGACACAGAATTGCACTTGCGCTTTAACAGCTTCTAAAACACGTTTCCCCCCTAGACAAGCAGAGATAAAGCTCTATGAATATGGCCCCTTGAGATGACAAGCTGCAGCTATAGCAGTCATGACCTTTTTGAATCCAACGCCTTTGAGATCTGGCCGAGATACGGGCATATCTAACAAAGTATGAATCTTCAACAACTGTGCAAATGATTCACTGAGAtagaagcaaaaacaaaaagaagcagaaattgcacagataaaaaggaaactgaaaTACTGAAAGTCAAATCTGGCTTTCTGTAGCGAGCAGTAATAGTTGCTGTTCATTGAAAGCTAGCATAATGTGGCGAATCCTGTAACTATGCTACACATGCtctatattttaatgttacagacATTTGTAAGCTATATATGATATACTTTATATATCCCAGGTTGAATAAAATATCCCTTTTCTCCTTATTATTTTACACAAATTGCACCCTGAGATTTGATAAAACAAAATGTCCTTCAAAAGCTCCATGTCTTAAGCCTCATAATACAATAAACGACTATTAAACTGATCTTTATGTACAAAATGCTGCACTTATACTAGAGAACATCCTACAAATACTGTAAGACGCACATAAGCGAACAGTACATCAACCAATCACACTCTGAAGATAACACGCTGCACATTTCTGAAGCGGATGCAGATTTCCCTGCAGCAGCACTAATAAATTCAAGCTATTTTACCTTGACAGACCATAGTTTCCAGTATGACATACTTGAAGTCATGCTAAAATATGTTACTGCATGTGCTGCTGTTGGAGGAACGAGACAAATGTGTGGCAGTACAGACAGCATCCTCTCGTGTGTTATTGCAAATGTATAATACCATAACTGAATCTTTCTTGCTCTCAATTAAATGTATCTGACATCCTCACTCAGATAACCTCTGAAATCAATGTATGGCTTTCAAGGACAACACTACTGCTTGTCCTTACTCACTGTACTACTGTTTATTCTGTCTCCAACTGGAATGCTGGTGTTTTCTCACAATAAATTGACATTTACAGAATAACACTAATGTTGCCTAAGAACAGGAGACACTGAAGTCACGGGACACATTAGCATTTACAGTTTGTTTCACTATCGCAGTGATTAGTTAtctgcaaaaacaaaatatatcaaGATATCCAGAGGGAGAATCTTCCTAACCTTGTTCATGTCATTTGTTATGGATTTGAACCTCAGCATGACATCAGAGACAGACGGAAGGACAAACTCTTCTGTCATGTTTCTAAATATAGGAGACAGTACTGTATGTCCCATGCACAATACAAAACTATACCGGTTGTGCTCCATGGCATAAAAGGGAAACAAATGTGTCAAACAAAATTTCCATAAAATCCGAAAAATCTGAGGCTACATAAGAGAATGAATAACCCTAATGCATAATCAGATTTGAGGAACGACAGCTTACAGTATGCAACAAGGCCTAACATGAAAATGCACTGAAGGTGTTGGTCAGTGGACTGTAACAACAGTGCTTGTGTCTTAAAGTGACTTATTTCATTAGCCATCGTTGCTGATCATCATCTGCCTGAACATcgaagacacacacacacacacacacacacacacacacacacacacacacacacacacaccagatttTAAAATCTGATCTCCTTTTCATTTATGATACCACTTTAGCAGTAATTTCACTGTGTGCCTTGCAAAAAAACTGCTGCCCCATCCAAGTAGAGAAAGGAAATTCATGGTGATTTCTGGGTTTGAATTAGAAGCAAAGTATCAATTCACTAATGTTTCCTTTCACTTATTTGCCTTTAGCTTCAGCTGGGCAACCCTAGCTTGTCCCAGTTTAGTCTGAATGTCGACAGGCCTTTCAAAGAAGCGGACTATGGTCGGCTCGTTGAGCAGAGAAGCCAGGACCTGCTCAAACGAAAACGACCAATCCAGCTCTGTGAGGTCGGGCCCTGCATCCTGACTGTTGCAGGAGCTGGAGGTGTCGGAGTTCTCTGGGGTAGTAGAAGCTTCTTGGGTTGAAGACCCCGCAGCAGCAGTGTTGGCAGGTTTTGTGGACTCGGGCGGGCTGCTCGACTCATGCAGCCTCCGTCCCACCTCTTCCATCCTCAGGAGAAGGCTGGTTACGTGGGCCACGGCTTGGTACAGCGACTCCTCCTCTGGGTCGCCATGAAAAATGTTGTACAGG

Function

symbol description
tbc1d8b Involved in glomerular filtration. Predicted to be located in cytosol. Is expressed in brain; neural tube; pectoral fin bud; and pronephric glomerulus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 20. Orthologous to human TBC1D8B (TBC1 domain family member 8B).

NR:

description
PREDICTED: TBC1 domain family member 8B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228523 True 3402 lncRNA 0.38 2 24571609 24575143

Neighbor

gene id symbol gene type direction distance location
gja2 LOC104934295,LOC103366311 coding upstream 5223 24561997 ~ 24566386 (+)
gjb1a LOC101466165,LOC102776897,LOC100709641,LOC103366312,LOC104934306 coding upstream 11670 24555124 ~ 24559939 (+)
LOC120543986 LOC100174876 coding upstream 48976 24490685 ~ 24522633 (+)
msna msn,LOC101079839,LOC104934336,LOC103395301,LOC102221775 coding upstream 102969 24451007 ~ 24468640 (+)
zc3h12b zc3h12b,LOC102800093 coding upstream 133246 24429255 ~ 24438363 (+)
aifm1 aifm1,LOC103370918 coding downstream 16958 24592101 ~ 24607180 (+)
glra4b LOC103370926,LOC100704648,LOC106516433 coding downstream 33326 24608469 ~ 24618480 (+)
nufip2 nufip2 coding downstream 45324 24620467 ~ 24629465 (+)
LOC120544010 LOC103359318,LOC102303247,LOC102209186,LOC102794923,LOC100703358 coding downstream 414477 24989620 ~ 25052549 (+)
sez6a LOC101482153,LOC102209856,LOC102794455,LOC103373328 coding downstream 507781 25082924 ~ 25176404 (+)
G168512 NA non-coding upstream 48307 24522674 ~ 24523302 (+)
G168473 NA non-coding upstream 130414 24438569 ~ 24441195 (+)
LOC120543831 clg10hxorf57,LOC103366308,LOC102289771 non-coding upstream 164633 24405115 ~ 24406976 (+)
G168460 NA non-coding upstream 172980 24395442 ~ 24398629 (+)
G168383 NA non-coding upstream 343032 24225214 ~ 24228577 (+)
G168604 NA non-coding downstream 359860 24935003 ~ 24935594 (+)
G168672 NA non-coding downstream 659332 25234475 ~ 25237972 (+)
G168746 LOC108233889,LOC103357738,LOC107386602,LOC103394754,LOC100701475 non-coding downstream 1048603 25623746 ~ 25627730 (+)
G168747 NA non-coding downstream 1072939 25648082 ~ 25648285 (+)
G168756 NA non-coding downstream 1177720 25752863 ~ 25753068 (+)
gab3 NA other upstream 151264 24410305 ~ 24420345 (+)
G168226 thoc2 other upstream 643128 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 653132 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1925783 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 2149555 22394516 ~ 22422054 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 411322 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 1264261 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 1293011 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 1424920 26000063 ~ 26223445 (+)
LOC120544064 tmem164 other downstream 1968653 26543796 ~ 26568500 (+)

Expression


Co-expression Network