G168746 (LOC108233889,LOC103357738,LOC107386602,LOC103394754,LOC100701475)


Basic Information

Item Value
gene id G168746
gene name LOC108233889,LOC103357738,LOC107386602,LOC103394754,LOC100701475
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 25623746 ~ 25627730 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228828
CCTGAAGTGATTTTATTACAAAGTTCATGAGGACTTACAGTATTACAAGAGAATTTGTCAACATGCGAAAACAGAACAAAGCAGAACACAGGAGTTTAACAAACTGGTAAGATAAGACGATCCACTGTtcacaataaacataaaaactgATTAAGTCCTCAGGAGGTGGGAGCCGGTGAATGACTACAGTGCAGGCATAGAACGGCCACATTCACACTGACTCAGCAAAGGTCAATCCAACCAAGGCAAGATGTGCACATCTCAAGAAAACATGTTACAATTTTTATATGCCATCGGCTTTTCTCAGAACTTTTAGAAAGCTTCACTTGTATGTACATAAAACTGTACAAAAACATGGCATCACAAGCATTTTATCCTATATAAATATACCAACAATTAGGATAACAACTAGATTCTCTCTCGCAAAGACATATTTTCAAGGCTTTGTTCTAGATGAACTGTGAAAAAGATGAAATGTTAAGTTAATTTCAGGTTGTTTTGGGAGAGGGCCTTTTGAATATGAACCAGCACTGACATTTCAGAAAGTAAAGGAAAAGAGTAAACAGTTTCTACCAATTATCTTTGGAATTCATGCTTAAATCACCGCCTGCTTGACAGCAGATGCAGGGTTGTGGAGATCTATGTACACTACACCACCAAAAGATTTCAATATTTTTTCACACAATCACTTTTCCAAGAGTCTTTGatcagtaagaaaaaaaaaatcctttgccAATTTCAGTACAGCAATTTGTCCATCTGTCCACAGAAATGATCACCATACGATACACACTACAGAGAGGCAAAAGATACTCAagtgaattcaacattaaatCAATGTTAAGTACAAATTAAACATTATTCAACATACTTTTGAGTGTATTTAGGTGCTTCATGATGTTCTCTTACTTTAATCAAGGAGAACCAttctgtgtttgagagagaagtAAACACAGTTCATTCAGCATGAGTTCAAAAGAAAGGTCAAACCTGGTGATAAATTGTTCCAGGGGTGAGTAGCAGGAGGTCATTATCGGCTGGAGTGAAAGAGTCCAACTCCTTAAGAGAGGGGGAAAATAGGCCCaggcttgtttttttgttttattttgcagaGGACTTAAATCAAACTCCTGTCATTCCGTTCGGAGCAACAACCGATGATTACGCTTATCTGCTAAGAGTTGCCCCATTTACTTCATGTATTGGCGATCAAAGAGATAAATCTGAAGATTCCAGATTCCCGAAAGCGATAAGTGTACTTAGGCTGGAATCAGGTTAAGATTTATCCCCCGAGATAAATCTGGATGCAAAGCAATTGTGAATCTGAATCAAGTCCAAGCATTTCAATAGATAAAATTGTGATTGAGGCTATGTGACATTGGTTTTATCACTCATTGCTATCTTCCTCACTTATCATTAATTCCAGGTCAGTGGTTTAGCCACTGCTTTGAGTTCGTGAATGGTGCTATCTGCAGCTCTGAGAAGGGTGCTTGGGGGAGCTGTGGGGGTTTCATCACAGTGTATCATGGCTGTTGTTTGAATTTTTATTTCAGTCGCTAAATGGCTTTGAAAACGGCATAATGTGCTTTCTCCCCCTCAAGGCAGGATAATCGCCGACCTTATTTAATCATGGCCATGTCCAGTAATTTCCATATGTTTTCAGTTTAATTATTCTAAACGCAGTTTTCAATGACAGCATGATGAGGTAAGTGCTGATAAAAATACCCCTTTTAACTGATTGTAGCTTTGCGGGTGGATTTGCATTATCTGGTGGGTGCCGTGTCCTGGGGGTGTGCTCACACATGCCCCAGCTCAGGACTCATTACTCACCCTAATTAGGAAATGTCCATTGAAGGCTCCTCCACCCTTCCTCAGACACACAATCTCACTATGGAAATACTCTGCAGAGGTGAAAGGTATCTACAAATCTAATCAAATCAATGTTTAAATCAAAGACACAGGCTCAGTCTACAATGTTGTAAGGCAGCCCTAGTGTTGTCATCATTAACATCCAATTACTGACAAATACACAGTGTCCTTCAGAAATTCTTTGTAAAGATAAATGAAGCCCACGGGCATGCCCTATTTTTTATTCTATCTTTTATAGCCAGAAGGAGGAAAATGGCTATTAATTTATTAAACATGTTGTCCTCAATAGAGTGAAAATCATAGTTAACAGGAATTGCAGTAAATCGAGCTGAGACTCCTACTATAAACGTATACGTTTAAGCTCAACGATATTCTGCATTTGCAAATGTTATCCACTCACATGAAaccaaacatttatttagaaatgtccCATGTTATTGACAATAACTCCCAAGAATTCTTCAAATCTATTCATTAGACTTCAAGGTCCACACTATCTGTGAATTCACTTATTCCAGTGTGCACTGTGTATTGAATTCACCTCTGAAGAAGTATTCATCTAGAGAGAGCTGCTactttaaaacacaaagaatTTACTCTCAACAAAGAGCACTCATGTAGTAACTTCCAAGTGCTCAATCTCTCCAGTGGTTCTCCATGTTCAAGTGCCCTTTTATGTAAATACCTCTTTATGCATTAATCCGATCTACAGAAGTTCTTATGGATCATAAGGGGAGATGTCGCGACAGAGTAGCgcttttaaaaatgacacactggtatGATTTCATCAACAGAGTGTGTCATAAGGTTTTATATAAAAAGCCAATCAGAATGGTTCTTGTGAGTACTCTGCGTTTGGTCATTGTGACTCTGGGGTACTGTGGCCAAGTCAACCGTTTACATGATGAACGACAGGTCACAGTGCTGAGAGTCAGTGGAACATAATGTCAGTTTAAATGTTGCCACACAGCCTTCTCCACCAGTGGCAGAGCACTACAGGGAGCAGAGGTAAAGGCTATTCTACTATGATTAGGGGTCCAAGGTGTATGTGATTGTGAGGAGCGGATAAATGCCTTTCCACAATATCGAACTCCACTTCTGGAGATGGTTTCAATCAAgtttaaacagcagcagcaaagaaaagcttaaataTGCTAGAATTCTGAGGCAATTTTTTTCAGCTTATGCCAGACAAAAATATATGTAGAACACACCATTCAAATGTATTTACAGCACTGTACATTAAGAGAGACCGTTTCATTTGATTGTTAGTCAAAAGTGTTATGCCTGTAGGTAGGGCCTGGCTGTCTATTAAATGATAGGTAATAATGGCACAAGAGCACTGTTCACAACTTTCAAATTCAAGAGATCACTTCACAGAATGGGACTTGGCTAACTACAACAATAATTAGTTACTACTAAAGTAGCAATTGCCATCTGCATTTCCTTTTGATCAGTTAGAATTGTATCCTTCACGATTTCGTATAAATAAATGAGTGAGTGCATCAATTAACTTTGTGGAATTCTTAATAAATATgctaataaattaataatttaagaaggaaatgacaaaaaacaagTGTTCATGCCAGTGATTGAATGAGTCACAGCCTACTGTAAACTACAAAACGGGCATTGGCTTTAGCATGTAGACAGCCTGTTTTTCCTTCTGAAGTGGGTGTACCTTTTCTTCATTTGTGCACCAATCAGATGACGATATTCCTCACAGGTAAATTTCTCTTTTTGGAGTGTGGGCagagggggaggtgggggggaaCTCAGAGGCTACGCTCAGGGGCATCTCCTCTAAGGGGCAGTCCTGACTGGCGTCGTGACCACTGTTGGAATAGGCACTGCGGGAGGGCGGAAGGCGCGACCGGTGCTCCTCGCCACCCAGCCTGGCGCTCCCGTTAGCCAGGCGTCCCAGGCTCCCTCTCTCCTGGTAAGGCACGAAGGTGGAGAGTTTCGGGGGGTTCCTGGTCTTGCGTACGGGGGATGGATGCCCGGGCATCCAGCAGGCGTCTGAGTGGCCCAATTCACTGCACTCGGTTGTACAGTTTCCGGTCATTGCCACATCAGGGAGGGAGCGGATA

Function

NR:

description
PREDICTED: protocadherin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228828 True 3962 lncRNA 0.41 2 25623746 25627730

Neighbor

gene id symbol gene type direction distance location
LOC120544417 NA coding upstream 215009 25316741 ~ 25408737 (+)
LOC120543567 LOC104950804,LOC103373327 coding upstream 404374 25214909 ~ 25219372 (+)
sez6a LOC101482153,LOC102209856,LOC102794455,LOC103373328 coding upstream 447342 25082924 ~ 25176404 (+)
LOC120544010 LOC103359318,LOC102303247,LOC102209186,LOC102794923,LOC100703358 coding upstream 571197 24989620 ~ 25052549 (+)
nufip2 nufip2 coding upstream 994281 24620467 ~ 24629465 (+)
LOC120575614 LOC103357741 coding downstream 222590 25850320 ~ 25859087 (+)
hrh2b LOC104968172,LOC103357747,LOC102792011,LOC104946893,LOC103357743 coding downstream 270733 25898463 ~ 25929228 (+)
kcnip1b LOC103363037,LOC101476742,LOC107386610,LOC102788752,LOC101158298,LOC104941268,LOC106950639 coding downstream 314858 25942588 ~ 25966303 (+)
npm1a LOC101479348 coding downstream 340196 25967926 ~ 25976458 (+)
kdm6bb LOC105024598,LOC105902372 coding downstream 541563 26169293 ~ 26197551 (+)
G168672 NA non-coding upstream 385774 25234475 ~ 25237972 (+)
G168604 NA non-coding upstream 688152 24935003 ~ 24935594 (+)
G168541 tbc1d8b non-coding upstream 1048603 24571609 ~ 24575143 (+)
G168512 NA non-coding upstream 1100444 24522674 ~ 24523302 (+)
G168473 NA non-coding upstream 1182551 24438569 ~ 24441195 (+)
G168747 NA non-coding downstream 20352 25648082 ~ 25648285 (+)
G168756 NA non-coding downstream 125133 25752863 ~ 25753068 (+)
G168757 NA non-coding downstream 190526 25818256 ~ 25818477 (+)
G168760 NA non-coding downstream 219428 25847158 ~ 25847638 (+)
G168769 NA non-coding downstream 350854 25978584 ~ 25980307 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other upstream 634357 24986465 ~ 24989389 (+)
gab3 NA other upstream 1203401 24410305 ~ 24420345 (+)
G168226 thoc2 other upstream 1695265 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 1705269 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 2977920 22621393 ~ 22645826 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 211674 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 240424 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 372333 26000063 ~ 26223445 (+)
LOC120544064 tmem164 other downstream 916066 26543796 ~ 26568500 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other downstream 1031628 26659358 ~ 26675795 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G889906 LOC106603262 unknown NC_048574.1 CM023228.2 41712327 ~ 41717292 (+)
tiger barb (Puntius tetrazona) G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding NC_056708.1 CM032077.1 6734932 ~ 6759645 (+)