nufip2 (nufip2)


Basic Information

Item Value
gene id nufip2
gene name nufip2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24620467 ~ 24629465 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777317.1
TAGTAGACACGGAATTTAGTGCTGGTGATCACCCGAAACAGTGCCATTTTTAGACGTTTACTGCTGACGTTTACAGAGGCTTCAAACAGCTTCCGTTTACACTGGTAGTGATTGGACTGTCCTGCACTTACCCCGTGAGCTAACATATTGGGTGAACAAGTCCGACAATCTACACTTCAATGGAGGAACAGCCCAAAGATCGGGCACAAGAAAGGCAATATCACCACCACGGAGAAGACAAACACTCTATTCAACATACAACTTGTCTAAAACATGATCAGAGCCACTTCCAGCGCCAGCATCAGGAAACGCAGACGAAGAAAACAGGTTGGGCCATCCGGAAAAGCAATAAAAAAGTAAACATCAGTGAGGAGGAGGTTGAGAAGAATCCACATCTATCTGATACTGTTGGTATGTCGCATCCCCCCAACAGCAATGGTAACCGACACACAAGTAAtgcaaatgtgaagcagaagTCCACACAAAAGCTTTACACGACTGTTCAAAAAGTGAGCAGCAAAGGCTTGGACCATAAGAAAAATATGGACCTTAAACATGACAAGGAAAAGGCTCTGGATTTGAATTATCATGAGGGCCCACTTTTGGATAAGAAAGACTCAATGTTGCTTCAAAATGGTGTTGTAAACTGTGGCTTAATTACAAATGGCTATTCTAGCAAGGACAATGATGGCAGCGGCTCCGAAGGTGGATATACTACTCCGAAGAAACGCAAGGCCAGATGCAACAACGGCAAGAACACTGATTATGGGAtaagagaaaaggagaaagacATGCAGCAGGGCAACACTACACAAGAGCATGGTGCTTTTATTCTTGACACAACTGAGAAGGGAGTGACTTCTAGACTTGATGGCGTTAGAGTTGCCCATAAAGTAGATGCTCAGTCAGCGGCTAGACGGGCTGTTGCGTCAGAGGCTTCAATGGGGAAAAACTCTGATGGCAAAACAGTTGGCCCCTTTGGTAAAAAGACTGAGGAAAGGCACAAAGCCAAGCTTTCCTCACCTTCAAAAGAAGACTCATGGACTTTGTTCAAGCCCCCTCCTGTATTTCCTGTGGACAATAGCAGTGCAAAAATTGTTCCCAAGATCAGTTATGCAAGTAAAGTAAAAGAGAACCTCAACAAAGTAGCTCAAGGTGGAGGAGAGGCACTGCCGCCTCCTGTTAGACTGTCACAGGTCCCTATGTCGGCTATGAAAACTATCACCTCAGCTAGCTTTACTAATGGCCCTGTTTCTGGAAACGGAAACAACTGCGCATCAGTGGGTACCTTCTTTGCTCCTGCTGCTAGTAGTATTCAAACAGCCCCATCTATCCCAAGTGGCGAGAATGTAGCATCTCCTTTGGAAAGTAACTGTAGCTCTACAACCAGTCCTGTAGATGAAGCATATGAGCTTAGAAAGTGTACTCTTTTAATTTACCCTTTAAATATGCAACCTGTGCTCCCTAGTGCTCGTCACCTTGACCCCCCGGCTGCTCAGACAAATCAGAAAGCCTTGGGAGATATCTTCCAGAATCAGTGGGGGCTTTCTTTCATCAATGAGCCCAACTTGGGACCAGAAGGAGGGGGTGGCCAGGTGCCTGCAGAGGACAAGTCTACTGTGGTCACGCCTCAAAGCGAGTGTCAGGCTGTTGCAGCCAAGGCTGCCCAGCCCTGCTTTGATGTAAGCCCATCATTCTTAGAGCCTGGCACTTTGGCTCAAGACCCTGAGAAAAGGACTTGTGCCCCTTGCAATATGTCTAATACATGTTCTCCTGCTTGTTTGATGAGTGAGGAGGAGAACAAGCTGCAACCATGTGgccaggaaaagacaaaagtTGAGGCCAAGGGTGCAGGTTCTGCTGTGTTGGCCCCCAGTAAAGACAACGGTGCTAAGCCTGGACAGGGCCAGCTAACCACTGTGCTGTTTGGCTCATCTACACAACAGGCCCACTCTAAAGACATTGGCAGAAGGTCCTTTGATATTAAAGCTGCTGTCACTTATCACACTAAAGAAATGGAATTCATTTTCAACTTGCAAAAACAAGATCCAAAAAGAGTAGTGGTTTATGATGAGACCAAGGATGGACCTGATCAGTGAGGTAGATGGGCTACAGTACTTCTCTTCTGAGTGCTGCAATGATCTACCTTGGGAATCATAAATCCTGTTGGACAGATAAAGTGACAACTGTGAAAACATTGATAGATTAGCATGACAGATATTCCTTGGAATCTCCGGTGGAATAACAGACTTCTTTCGGGGGCATcagacaaacacgcacacactccgGAGGGACGTTAAAGGAGTTGATCTGTGCCTCTCCAACACGATAAATGGAACTTTGGAGCTGTGGTAGTTGTTTGTCTCATGGCTCTTGAAGTAAGATGTTCAGGAGTTCAACAAAGGAAGGTGTCATGGATTGCACCTCCCTTAGCCTTTATCCTGTTGAACTGCGGCAGCCGTCAGTCTGACAATGGGATGCCTCAGTCATTTTCTTTCTTCGCGCATTCAAATGAGTTCATTGGATATGTTAGACGTTATACATACACATCCGTGTGCAAGCTTGAATTCATTGTGGAAGAAAGGAGAACACACTTTGCAAAGAATGCCTTGGAAGTTATGGAATTAAGATCGTTAAAGAGTTGAACTGTAATTTAAGTGGAAGCTCATAGGTGAGGCCCCATCCAGGAAGGGAAAACCTTGTCTTAAGTCCTTTAGGGAAAATCAGAGCCCAGAAATTAAACacttgctttttttcttttatactgTTTTGTCTGCCCTAACGTGATGAGTGTTATCTGCACTGCAGTTTGACCCCAGAGCACAGGTACAGAAGTGCCCAATTTAAAGAAAAGCGACGCCCcttcatttcattgttttacaGGTGTATTCAAGATTTTAAAATCAGGTCTCCGTTAAAGGCAAAAGCTTTTCATCTTAAAGcttttaatacatttcattCAGATTGTTATGTCAGTGCAGACTATTCTTAAATTCTGATTCATATAAACCCTCTAGTATATGAATCCTGATTTTAGGAATTAACTGAGTGACTCATTAAGAGGCATTGCTACCGATAAGGTCTTCTGCGATTTGTGCTATTTGTTCAGCAGCAAGA
>XM_039777318.1
ACACGGAATTTAGTGCTGGTGATCACCCGAAACAGTGCCATTTTTAGACGTTTACTGCTGACGTTTACAGAGGCTTCAAACAGCTTCCGTTTACACTGGTAGTGATTGGACTGTCCTGCACTTACCCCGTGAGCTAACATATTGGGTGAACAAGTCCGACAATCTACACTTCAATGGAGGAACAGCCCAAAGATCGGGCACAAGAAAGGCAATATCACCACCACGGAGAAGACAAACACTCTATTCAACATACAACTTGTCTAAAACATGATCAGAGCCACTTCCAGCGCCAGCATCAGGAAACGCAGACGAAGAAAACAGGCAATAAAAAAGTAAACATCAGTGAGGAGGAGGTTGAGAAGAATCCACATCTATCTGATACTGTTGGTATGTCGCATCCCCCCAACAGCAATGGTAACCGACACACAAGTAAtgcaaatgtgaagcagaagTCCACACAAAAGCTTTACACGACTGTTCAAAAAGTGAGCAGCAAAGGCTTGGACCATAAGAAAAATATGGACCTTAAACATGACAAGGAAAAGGCTCTGGATTTGAATTATCATGAGGGCCCACTTTTGGATAAGAAAGACTCAATGTTGCTTCAAAATGGTGTTGTAAACTGTGGCTTAATTACAAATGGCTATTCTAGCAAGGACAATGATGGCAGCGGCTCCGAAGGTGGATATACTACTCCGAAGAAACGCAAGGCCAGATGCAACAACGGCAAGAACACTGATTATGGGAtaagagaaaaggagaaagacATGCAGCAGGGCAACACTACACAAGAGCATGGTGCTTTTATTCTTGACACAACTGAGAAGGGAGTGACTTCTAGACTTGATGGCGTTAGAGTTGCCCATAAAGTAGATGCTCAGTCAGCGGCTAGACGGGCTGTTGCGTCAGAGGCTTCAATGGGGAAAAACTCTGATGGCAAAACAGTTGGCCCCTTTGGTAAAAAGACTGAGGAAAGGCACAAAGCCAAGCTTTCCTCACCTTCAAAAGAAGACTCATGGACTTTGTTCAAGCCCCCTCCTGTATTTCCTGTGGACAATAGCAGTGCAAAAATTGTTCCCAAGATCAGTTATGCAAGTAAAGTAAAAGAGAACCTCAACAAAGTAGCTCAAGGTGGAGGAGAGGCACTGCCGCCTCCTGTTAGACTGTCACAGGTCCCTATGTCGGCTATGAAAACTATCACCTCAGCTAGCTTTACTAATGGCCCTGTTTCTGGAAACGGAAACAACTGCGCATCAGTGGGTACCTTCTTTGCTCCTGCTGCTAGTAGTATTCAAACAGCCCCATCTATCCCAAGTGGCGAGAATGTAGCATCTCCTTTGGAAAGTAACTGTAGCTCTACAACCAGTCCTGTAGATGAAGCATATGAGCTTAGAAAGTGTACTCTTTTAATTTACCCTTTAAATATGCAACCTGTGCTCCCTAGTGCTCGTCACCTTGACCCCCCGGCTGCTCAGACAAATCAGAAAGCCTTGGGAGATATCTTCCAGAATCAGTGGGGGCTTTCTTTCATCAATGAGCCCAACTTGGGACCAGAAGGAGGGGGTGGCCAGGTGCCTGCAGAGGACAAGTCTACTGTGGTCACGCCTCAAAGCGAGTGTCAGGCTGTTGCAGCCAAGGCTGCCCAGCCCTGCTTTGATGTAAGCCCATCATTCTTAGAGCCTGGCACTTTGGCTCAAGACCCTGAGAAAAGGACTTGTGCCCCTTGCAATATGTCTAATACATGTTCTCCTGCTTGTTTGATGAGTGAGGAGGAGAACAAGCTGCAACCATGTGgccaggaaaagacaaaagtTGAGGCCAAGGGTGCAGGTTCTGCTGTGTTGGCCCCCAGTAAAGACAACGGTGCTAAGCCTGGACAGGGCCAGCTAACCACTGTGCTGTTTGGCTCATCTACACAACAGGCCCACTCTAAAGACATTGGCAGAAGGTCCTTTGATATTAAAGCTGCTGTCACTTATCACACTAAAGAAATGGAATTCATTTTCAACTTGCAAAAACAAGATCCAAAAAGAGTAGTGGTTTATGATGAGACCAAGGATGGACCTGATCAGTGAGGTAGATGGGCTACAGTACTTCTCTTCTGAGTGCTGCAATGATCTACCTTGGGAATCATAAATCCTGTTGGACAGATAAAGTGACAACTGTGAAAACATTGATAGATTAGCATGACAGATATTCCTTGGAATCTCCGGTGGAATAACAGACTTCTTTCGGGGGCATcagacaaacacgcacacactccgGAGGGACGTTAAAGGAGTTGATCTGTGCCTCTCCAACACGATAAATGGAACTTTGGAGCTGTGGTAGTTGTTTGTCTCATGGCTCTTGAAGTAAGATGTTCAGGAGTTCAACAAAGGAAGGTGTCATGGATTGCACCTCCCTTAGCCTTTATCCTGTTGAACTGCGGCAGCCGTCAGTCTGACAATGGGATGCCTCAGTCATTTTCTTTCTTCGCGCATTCAAATGAGTTCATTGGATATGTTAGACGTTATACATACACATCCGTGTGCAAGCTTGAATTCATTGTGGAAGAAAGGAGAACACACTTTGCAAAGAATGCCTTGGAAGTTATGGAATTAAGATCGTTAAAGAGTTGAACTGTAATTTAAGTGGAAGCTCATAGGTGAGGCCCCATCCAGGAAGGGAAAACCTTGTCTTAAGTCCTTTAGGGAAAATCAGAGCCCAGAAATTAAACacttgctttttttcttttatactgTTTTGTCTGCCCTAACGTGATGAGTGTTATCTGCACTGCAGTTTGACCCCAGAGCACAGGTACAGAAGTGCCCAATTTAAAGAAAAGCGACGCCCcttcatttcattgttttacaGGTGTATTCAAGATTTTAAAATCAGGTCTCCGTTAAAGGCAAAAGCTTTTCATCTTAAAGcttttaatacatttcattCAGATTGTTATGTCAGTGCAGACTATTCTTAAATTCTGATTCATATAAACCCTCTAGTATATGAATCCTGATTTTAGGAATTAACTGAGTGACTCATTAAGAGGCATTGCTACCGATAAGGTCTTCTGCGATTTGTGCTATTTGTTCAGCAGCAAGA

Function

symbol description
nufip2 Predicted to enable RNA binding activity. Predicted to be active in cytoplasmic stress granule; nucleoplasm; and polysomal ribosome. Orthologous to human NUFIP2 (nuclear FMR1 interacting protein 2).

NR:

description
PREDICTED: nuclear fragile X mental retardation-interacting protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777317.1 True 3117 mRNA 0.44 4 24620467 24629465
XM_039777318.1 False 3093 mRNA 0.44 4 24620473 24629465

Neighbor

gene id symbol gene type direction distance location
glra4b LOC103370926,LOC100704648,LOC106516433 coding upstream 1987 24608469 ~ 24618480 (+)
aifm1 aifm1,LOC103370918 coding upstream 13287 24592101 ~ 24607180 (+)
gja2 LOC104934295,LOC103366311 coding upstream 54081 24561997 ~ 24566386 (+)
gjb1a LOC101466165,LOC102776897,LOC100709641,LOC103366312,LOC104934306 coding upstream 60528 24555124 ~ 24559939 (+)
LOC120543986 LOC100174876 coding upstream 97834 24490685 ~ 24522633 (+)
LOC120544010 LOC103359318,LOC102303247,LOC102209186,LOC102794923,LOC100703358 coding downstream 360155 24989620 ~ 25052549 (+)
sez6a LOC101482153,LOC102209856,LOC102794455,LOC103373328 coding downstream 453459 25082924 ~ 25176404 (+)
LOC120543567 LOC104950804,LOC103373327 coding downstream 585444 25214909 ~ 25219372 (+)
LOC120544417 NA coding downstream 687276 25316741 ~ 25408737 (+)
LOC120575614 LOC103357741 coding downstream 1220855 25850320 ~ 25859087 (+)
G168541 tbc1d8b non-coding upstream 45324 24571609 ~ 24575143 (+)
G168512 NA non-coding upstream 97165 24522674 ~ 24523302 (+)
G168473 NA non-coding upstream 179272 24438569 ~ 24441195 (+)
LOC120543831 clg10hxorf57,LOC103366308,LOC102289771 non-coding upstream 213491 24405115 ~ 24406976 (+)
G168460 NA non-coding upstream 221838 24395442 ~ 24398629 (+)
G168604 NA non-coding downstream 305538 24935003 ~ 24935594 (+)
G168672 NA non-coding downstream 605010 25234475 ~ 25237972 (+)
G168746 LOC108233889,LOC103357738,LOC107386602,LOC103394754,LOC100701475 non-coding downstream 994281 25623746 ~ 25627730 (+)
G168747 NA non-coding downstream 1018617 25648082 ~ 25648285 (+)
G168756 NA non-coding downstream 1123398 25752863 ~ 25753068 (+)
gab3 NA other upstream 200122 24410305 ~ 24420345 (+)
G168226 thoc2 other upstream 691986 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 701990 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 1974641 22621393 ~ 22645826 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other upstream 2198413 22394516 ~ 22422054 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other downstream 357000 24986465 ~ 24989389 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 1209939 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 1238689 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 1370598 26000063 ~ 26223445 (+)
LOC120544064 tmem164 other downstream 1914331 26543796 ~ 26568500 (+)

Expression


Co-expression Network