LOC120543567 (LOC104950804,LOC103373327)


Basic Information

Item Value
gene id LOC120543567
gene name LOC104950804,LOC103373327
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 25214909 ~ 25219372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776689.1
TCAGACTGAGAGCTCATCAGAGCAAAAATGGCACACAAATGACAAGGCTGAGCGCACTGATAGCATTTCATCGTTATTTCTCTCTACTTAAGAAACCACTCAGGATATATCGCACAGTGGGTATATAGGCAATGTCTTTGTGCTTACCCGTAAATCCGCACACTTCGGATGATCCTGATGGGCCCGCGATGATCTCCAGTCTATAATTTTGTTTCAGAAATGCTGTTTTTTCAACAGTTGACCTGTCGTTTGGAGCTGTTCGCCACATGTGGATTGTTGCCCCGTGGAACAGAAGAGCTCCATTTAATCTCACGGATGGTGATGTAATTATTATTCAGATTAATTTGGGATACATTGGATTTCCGGGATCATACCCAAGAAAGTCCACACCGAGGTGTCTGGGGCGTTGGAGAAAGAAACCGAATCTATATCCCACACACTGGGCTGGGAATAACTCCAGACAATGCTTCAGTGTTCCAGCTGTGAAAAGCCTATTCTTGATAGGTTCTTGCTCAAAGTTTTGGACAGACCATGGCACATCAAATGTGTCCAGTGCTGCGAATGCAAATGCACTTTGACAGAGAAGTGCTTTTCACGAGAAGGGAAACTGTATTGTAAGAATGACTTCTTTAGGACATTTGGGACCAAGTGTGACGGTTGCGCCCAGGGGATTTTACCCAGTGATCTTGTCCGCAGGGCCAAGAGCAAAGTGTTTCACCTCAACTGTTTCACCTGTGTGATGTGTAACAAACAGCTGTCCACCGGAGAGGAACTGTACATCCTGGACGAATTCAAGTTCGTTTGTAAGGAGGACTATCAAAATAACAACGGGAAAGACACAATCCTCCTTTCAGTCACGACAAGCAGCGACCCAAGTCTGTCTCCGGACTCCCAGGACCCGCCGGACGACGAGAAGGACTCCGAGACGGGACATTTATCCGATAAAGACAACAACATGGAGAACGACGAGCAGAGTGCCGTCGGGAAACGACGCGGGCCTCGGACCACCATCAAAGCCAAGCAGCTGGAGACCCTGAAAGCGGCTTTCGCGGCCACGCCGAAACCCACCAGACACATCAGGGAGCAGCTGTCCCGGGAGACCGGCCTCACCATGAGAGTCATCCAGGTTTGGTTCCAGAATCGGAGGTCCAAAGAGAGACGCATGAAGCAGCTGAGCTCTCTGGGCGGCCGGAGACACGTGTTCTTCCGCGGCCAGAGGAGGATGAGGGCGCTGGGGGAGAGACTGGAAGCAGAGGAGCTTGGACACTTCTCTTATTATGGAGATTATCCTGGTGAATACTATGGCTCAGGAGGGAATTACGAGTACTACCAAGGCCCACCATCGCATGCTCAGACTCCAGCAGACTTGGGCTTTGTGCCCTCCTCTGTCCCTGCTGGCACCCCATTAGGAGCAATGGACCACCACCATCCAGGGCACCACTGTCCTGGAGAGATGCACTGTTTCTCTGACACAGTATCTCATCACCCTGCGGACTCACCCAGTCCAGAGCCCAATATGCCGGGCTCAATGCACAGCATCTCCAGTGAGATGTGTGGCCCCAGCACACCCTACACGACTGTGTCCCTCAGTGACAACGGATACACCAACCAGCTGTCACAACCCTCTTCAGAAATGAGCGAAGGCACTGTCTGGTAAACCAGCCGACACCCAGCTACAAGACACACATGGATTTTGAAGGCAAATCAAcgcttttttttgttcatttatttgaatgtacatttatttatttatctatgtatttatttgtgtatttatttatttatgtgctTGCATTTCTGTTAAGCTCTATTTAACTATTTATAAATCTCTATATTTGTATGTCAACATAATTGTTTATTGACTATAGCCAATCAATAGATTGTTTTAATGTGAATTTGACTAATTAATACATTCACAATGCTGGGCCTCATTGATCAAGCAATAAACAAACACGTGTATATGCTGCAGAAATTGTTTTTCACCGTTTACAAAAACCTTTTCTGCCACATATTTGACATGATTGTCCTTACAATGTTACAGTAATGTGAAAGTGCATGGCAGCATTTGTTTTTGGACCACCTTTCAGTGTTTTAGGCATACTGATAAACAGCATCCTccatccatgagttcatgtgTAATACAAGATTTTATCATTTAATAACAGAATATGATTGTGATGATCAATacatttgaccaaatacctctctCA

Function

NR:

description
PREDICTED: LIM/homeobox protein Lhx1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776689.1 True 2210 mRNA 0.46 5 25214909 25219372

Neighbor

gene id symbol gene type direction distance location
sez6a LOC101482153,LOC102209856,LOC102794455,LOC103373328 coding upstream 38505 25082924 ~ 25176404 (+)
LOC120544010 LOC103359318,LOC102303247,LOC102209186,LOC102794923,LOC100703358 coding upstream 162360 24989620 ~ 25052549 (+)
nufip2 nufip2 coding upstream 585444 24620467 ~ 24629465 (+)
glra4b LOC103370926,LOC100704648,LOC106516433 coding upstream 596429 24608469 ~ 24618480 (+)
aifm1 aifm1,LOC103370918 coding upstream 607729 24592101 ~ 24607180 (+)
LOC120544417 NA coding downstream 97369 25316741 ~ 25408737 (+)
LOC120575614 LOC103357741 coding downstream 630948 25850320 ~ 25859087 (+)
hrh2b LOC104968172,LOC103357747,LOC102792011,LOC104946893,LOC103357743 coding downstream 679091 25898463 ~ 25929228 (+)
kcnip1b LOC103363037,LOC101476742,LOC107386610,LOC102788752,LOC101158298,LOC104941268,LOC106950639 coding downstream 723216 25942588 ~ 25966303 (+)
npm1a LOC101479348 coding downstream 748554 25967926 ~ 25976458 (+)
G168604 NA non-coding upstream 279315 24935003 ~ 24935594 (+)
G168541 tbc1d8b non-coding upstream 639766 24571609 ~ 24575143 (+)
G168512 NA non-coding upstream 691607 24522674 ~ 24523302 (+)
G168473 NA non-coding upstream 773714 24438569 ~ 24441195 (+)
LOC120543831 clg10hxorf57,LOC103366308,LOC102289771 non-coding upstream 807933 24405115 ~ 24406976 (+)
G168672 NA non-coding downstream 15103 25234475 ~ 25237972 (+)
G168746 LOC108233889,LOC103357738,LOC107386602,LOC103394754,LOC100701475 non-coding downstream 404374 25623746 ~ 25627730 (+)
G168747 NA non-coding downstream 428710 25648082 ~ 25648285 (+)
G168756 NA non-coding downstream 533491 25752863 ~ 25753068 (+)
G168757 NA non-coding downstream 598884 25818256 ~ 25818477 (+)
LOC120544202 LOC104958513,LOC101062417,LOC108233857,LOC103359319 other upstream 225520 24986465 ~ 24989389 (+)
gab3 NA other upstream 794564 24410305 ~ 24420345 (+)
G168226 thoc2 other upstream 1286428 23927342 ~ 23928481 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other upstream 1296432 23841533 ~ 23918477 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other upstream 2569083 22621393 ~ 22645826 (+)
LOC120575613 LOC103357740,LOC104968174 other downstream 620032 25839404 ~ 25846377 (+)
LOC120543603 LOC103357742,LOC104968170 other downstream 648782 25868154 ~ 25892531 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other downstream 780691 26000063 ~ 26223445 (+)
LOC120544064 tmem164 other downstream 1324424 26543796 ~ 26568500 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other downstream 1439986 26659358 ~ 26675795 (+)

Expression


Co-expression Network