pigs (pigs)


Basic Information

Item Value
gene id pigs
gene name pigs
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 20955254 ~ 20960447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776951.1
TCCTTACTAGCTACGTCTCAAACAAACGTGCCTTCTCGGAGTttgggacagacagacatagagttttatagtaaaatatttggTTACATTAAATAAAATTGTAGCTATGTATCTGGACCACgacttgttgttttttacagccAAGTAAATCGCCCGTTTTGTTTTTAACAACGGTTAAAACGGTCCTCATATCAAGCGCACCCATTCGGTTCATTGACAGAAATGGCTATCACGGAAGTGGaGCGCAGACGTGGTCAACTTGCTGCTCTGTCCATAGCAGCAGTGGTCATCATGGTGGGAGTCCCTCTGTGGTGGCGAACAACTGAAACATACCGCGCCTGGTTGCCTGTCAGTCAGATAAATGAGTTGGCTAATATGCAGCTACAGTTGAGTGCTGATGTGGAGGTGGTGTTTGCACGTGGAACGGTGACGCCAGAACAGCAGAAGAAGGTcccactgacacagacacaggatGAGGAACACACCGTAGATGAGAACACAGCTTTGAGGTACAGGTATGAGATAAGGTACCGCACAGCTACAATCATGGAGGAGGACGCGCTGGACCAGCCCACTGCTGCAGAGGCAGATCTTTCTCTGCACACGCTAAGTGAGAGTCCGTGTGGCTCTTTAGTTGTGTATGTGATCCCAGAGTCATCTTCACTGTTGCCTGAGGACGTGGACGTATATATCGGTCAGCGAAGGACAGCCCTGCTGCGTATTGGTGCCCAGATGAGAGTGGGCAGGACACTAGAGCAATTGCTGGCTCATCTGGAGCCTCGGATCAAGCAGGTGCTGCAGGTGATGTCTTTTAGCCACACCGACATCACCGCCGCCCTCAGTGACAGAGTTCGTCTCAGCCCTGGCAACAAAGAGAGCATCGCTGACAGTATGAGAGCCTTTAAATCCAGCCCAGGTTATGAGATAACATTCAGTCTGTTAAACCCAGACCCCAAGTCACACCGGCTAAACTGGGACATAGAGGGTGCCGTACAGACCTACATCCAACCTTTGCTTACAAAACTAGCCCCTGTGGCCAACTTCAGCCTTGACTCTCAGACCTTATACTACGCCGTGCTCGGTGTCAACCCACGCtttgacagcagcagcagcgcctaCACACTGAACTCTGATAGCCTTGCACATGTCATTAACCCTGTGGAGGCTAGACTGGgctcaaatGCTGCATCTTCCAACCCGGTGTTGAATTTTCTTCTGTACGTCCCGGATGCCCACCATTCCCCTCTTTACATTCATGACAACAAGAAACAGGAAGTGCCTTCTAATGCGTTTCACTCTCCACGTTGGGGGGGAATTATGGTCTATAATGTTAATGGTTTCTATAGACCAGAGGCTGTGTTGCCTGTTgacatcaacatcaacatggCCAAAGTCATGGGAGTCTTCCTTGCACAGCTTCGACTGTTGCTGGGTGTGCAGTCGTCTACCGCTCCCCCTGGCTTCCTGATGGCGCCGTGCGGCAGTACAGGACTAGCTGATTGGGAGCTGGACCGTCTCATGTGGAGTCGGAGTGTGGAAAATGTTGCAACAGCAACCACCACCATCACCTCACTGGCACAGCTGCTGGACCAGATAGGCAACATTGTTATCAATGACAACATTGCTGAACAGGTGTCCAGTGCTGTCATATCTCTGCAGCTGGCTGTGGCTGAATTGGAGGCTGGGAACCTCGGCTTTGCTCTGCAGTACAGTAAAGAGGCCATAATGGCATCGGAGAGGGCATTCTTTGACCCTTCACTTCTCCACCTTCTCTACTTTCCTGATGACCAGAAGTTTGCTATCTACATACCACTCTTCCTTCCCATGTGTGTACCTATTCTGCTGTCACTGCTCAAGATAGTGTCTGAGGTTAGACAGAAACGCAGAGAGAAGCAAGCCAAGAAGGACTGAGAAACACTTGGAGAAgatctaaacaaaaaaaaactgttttgtcaGTGGCCTTGACATTTAGGTGCAAAGGTACGCATGAAGAAACTCATTTGCAGCATGGAGTGTGGAATTTACAAAATAGTCACATATGATTTTTATTGTTTCATGTAAGGAATTGTTTATCTTAAAATGTTAATGAATGGCTGCCGGGCTGTGTGACACTGTATACTGGAAAGCTtgaattgttgtaaatgtgaataagtttttatatttgaattccACTTTCTATTCTAAGTTATTAACAAATAAAGACTTAACTCGTGGTCGCTCTTGGGTTAGCAAGAAATATAAGAATACCTgattttatattattacatttgGCAAGCACTCCTAAAGCAATTTACACCAATTTTGTCCattaaaattaaacaaacacaa
>XM_039776952.1
TACAGCAGTTTGTTAGAGCGCATTTCACACGTACAACATTTGTAGCGACCCTAGCACGAGGCTGTTTTCTCCAGACCCGCTGAAGCTAATAGCTAGTTAGCCGCACCAGCAGTTGCAGCAATGATGCCCTCTCTCATCTatcagtttaGCGCAGACGTGGTCAACTTGCTGCTCTGTCCATAGCAGCAGTGGTCATCATGGTGGGAGTCCCTCTGTGGTGGCGAACAACTGAAACATACCGCGCCTGGTTGCCTGTCAGTCAGATAAATGAGTTGGCTAATATGCAGCTACAGTTGAGTGCTGATGTGGAGGTGGTGTTTGCACGTGGAACGGTGACGCCAGAACAGCAGAAGAAGGTcccactgacacagacacaggatGAGGAACACACCGTAGATGAGAACACAGCTTTGAGGTACAGGTATGAGATAAGGTACCGCACAGCTACAATCATGGAGGAGGACGCGCTGGACCAGCCCACTGCTGCAGAGGCAGATCTTTCTCTGCACACGCTAAGTGAGAGTCCGTGTGGCTCTTTAGTTGTGTATGTGATCCCAGAGTCATCTTCACTGTTGCCTGAGGACGTGGACGTATATATCGGTCAGCGAAGGACAGCCCTGCTGCGTATTGGTGCCCAGATGAGAGTGGGCAGGACACTAGAGCAATTGCTGGCTCATCTGGAGCCTCGGATCAAGCAGGTGCTGCAGGTGATGTCTTTTAGCCACACCGACATCACCGCCGCCCTCAGTGACAGAGTTCGTCTCAGCCCTGGCAACAAAGAGAGCATCGCTGACAGTATGAGAGCCTTTAAATCCAGCCCAGGTTATGAGATAACATTCAGTCTGTTAAACCCAGACCCCAAGTCACACCGGCTAAACTGGGACATAGAGGGTGCCGTACAGACCTACATCCAACCTTTGCTTACAAAACTAGCCCCTGTGGCCAACTTCAGCCTTGACTCTCAGACCTTATACTACGCCGTGCTCGGTGTCAACCCACGCtttgacagcagcagcagcgcctaCACACTGAACTCTGATAGCCTTGCACATGTCATTAACCCTGTGGAGGCTAGACTGGgctcaaatGCTGCATCTTCCAACCCGGTGTTGAATTTTCTTCTGTACGTCCCGGATGCCCACCATTCCCCTCTTTACATTCATGACAACAAGAAACAGGAAGTGCCTTCTAATGCGTTTCACTCTCCACGTTGGGGGGGAATTATGGTCTATAATGTTAATGGTTTCTATAGACCAGAGGCTGTGTTGCCTGTTgacatcaacatcaacatggCCAAAGTCATGGGAGTCTTCCTTGCACAGCTTCGACTGTTGCTGGGTGTGCAGTCGTCTACCGCTCCCCCTGGCTTCCTGATGGCGCCGTGCGGCAGTACAGGACTAGCTGATTGGGAGCTGGACCGTCTCATGTGGAGTCGGAGTGTGGAAAATGTTGCAACAGCAACCACCACCATCACCTCACTGGCACAGCTGCTGGACCAGATAGGCAACATTGTTATCAATGACAACATTGCTGAACAGGTGTCCAGTGCTGTCATATCTCTGCAGCTGGCTGTGGCTGAATTGGAGGCTGGGAACCTCGGCTTTGCTCTGCAGTACAGTAAAGAGGCCATAATGGCATCGGAGAGGGCATTCTTTGACCCTTCACTTCTCCACCTTCTCTACTTTCCTGATGACCAGAAGTTTGCTATCTACATACCACTCTTCCTTCCCATGTGTGTACCTATTCTGCTGTCACTGCTCAAGATAGTGTCTGAGGTTAGACAGAAACGCAGAGAGAAGCAAGCCAAGAAGGACTGAGAAACACTTGGAGAAgatctaaacaaaaaaaaactgttttgtcaGTGGCCTTGACATTTAGGTGCAAAGGTACGCATGAAGAAACTCATTTGCAGCATGGAGTGTGGAATTTACAAAATAGTCACATATGATTTTTATTGTTTCATGTAAGGAATTGTTTATCTTAAAATGTTAATGAATGGCTGCCGGGCTGTGTGACACTGTATACTGGAAAGCTtgaattgttgtaaatgtgaataagtttttatatttgaattccACTTTCTATTCTAAGTTATTAACAAATAAAGACTTAACTCGTGGTCGCTCTTGGGTTAGCAAGAAATATAAGAATACCTgattttatattattacatttgGCAAGCACTCCTAAAGCAATTTACACCAATTTTGTCCattaaaattaaacaaacacaa

Function

symbol description
pigs Predicted to be involved in attachment of GPI anchor to protein. Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human PIGS (phosphatidylinositol glycan anchor biosynthesis class S).

NR:

description
PREDICTED: GPI transamidase component PIG-S-like

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG:

id description
K05291 PIGS; GPI-anchor transamidase subunit S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776951.1 True 2328 mRNA 0.47 12 20955254 20960447
XM_039776952.1 False 2234 mRNA 0.48 12 20955563 20960447

Neighbor

gene id symbol gene type direction distance location
aldocb aldoc coding upstream 2704 20944243 ~ 20952550 (+)
rskrb LOC104932898,LOC102076527,LOC102203318,LOC102308467,LOC103365139,LOC102796293 coding upstream 11935 20934632 ~ 20943319 (+)
cct8 cct8,LOC104932889,LOC102796595 coding upstream 21265 20926686 ~ 20933989 (+)
LOC120544627 LOC100703808,LOC102796895,LOC101465639 coding upstream 30875 20918228 ~ 20924379 (+)
tmigd1 NA coding upstream 38562 20913192 ~ 20916692 (+)
srsf1b LOC100705065 coding downstream 517 20960964 ~ 20965277 (+)
heatr6 heatr6,LOC102795018 coding downstream 9384 20969831 ~ 20980732 (+)
ddx52 ddx52 coding downstream 20865 20981312 ~ 20987927 (+)
rpl23a rpl23a coding downstream 28561 20989008 ~ 20991538 (+)
LOC120544780 NA coding downstream 29977 20990424 ~ 20990495 (+)
G167123 NA non-coding upstream 29847 20924596 ~ 20925407 (+)
LOC120543783 NA non-coding upstream 91147 20855736 ~ 20864107 (+)
G167015 NA non-coding upstream 641745 20313244 ~ 20313509 (+)
G166979 NA non-coding upstream 760822 20138733 ~ 20194432 (+)
G166824 NA non-coding upstream 1151198 19802727 ~ 19804056 (+)
G167195 NA non-coding downstream 71921 21032368 ~ 21032748 (+)
G167196 NA non-coding downstream 72749 21033196 ~ 21033400 (+)
G167199 NA non-coding downstream 92188 21052635 ~ 21054013 (+)
G167269 NA non-coding downstream 244315 21204762 ~ 21206867 (+)
G167374 NA non-coding downstream 489640 21450087 ~ 21450349 (+)
nle1 nle1 other upstream 132694 20815276 ~ 20822560 (+)
mtnr1bb LOC103354484,LOC100701643,LOC101479329,LOC101074288,LOC103475521,LOC107386965 other upstream 932722 19988882 ~ 20022532 (+)
map3k7cl map3k7cl other upstream 1109201 19835353 ~ 19846053 (+)
grik1a LOC101481540,LOC100699029,LOC104923829,LOC102784741 other upstream 1124229 19801593 ~ 19831025 (+)
scaf4a scaf4,LOC104923807 other upstream 1241532 19700172 ~ 19713722 (+)
dynll2b LOC107089378,LOC101174042,LOC103395122,LOC106514090,LOC107387006,LOC103140945 other downstream 6415 20966862 ~ 20968815 (+)
layna layn,LOC100708261,LOC101467228,LOC104929931 other downstream 213547 21173994 ~ 21180752 (+)
si:dkey-71l1.1 LOC101485670,LOC102299221,LOC103355094,LOC102789525,LOC104929928 other downstream 231604 21192051 ~ 21197037 (+)
mia mia other downstream 242103 21202550 ~ 21204162 (+)
LOC120544432 NA other downstream 638636 21599083 ~ 21608848 (+)

Expression


Co-expression Network