rpl23a (rpl23a)


Basic Information

Item Value
gene id rpl23a
gene name rpl23a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 20989008 ~ 20991538 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777320.1
ATGTATGAGACAGAGGAACTTTCTTAGCTCTCGCGATACATCGGCTGTGAGATCTCGCCCATGCATTATACTGCAGGAAACCCTGTTCAGTCTTCCTTTCTCAACATGGCACCGAAGGTGAAGAAGGAAGCTGTCCCTGCCAAGACTGAGGCCAAGTCAAAGGCTCTGAAGGCCAAAAAGGCTGTGCTCAAGGGTGTACACAgccagaggaagaagaaaatcaGGACTTCTCCTACCTTCCGTCGCCCTAAAACACTTCGTCTGCGCAGGCAGCCCAAGTATCCCCGCAAGAGTGCTCCTCGCAGGAACAAGTTGGATCACTATGCCATCATCAAGTTCCCCTTGACAACAGAGTCCGCCATGAAGAAGATTGAGGACAACAACACACTTGTGTTTATTGTGGACGTCAAGGCGAACAAACACCAGATTAAACACGCTGTCAAGAAGCTGTACGACATCGACGTCGCCAAAGTCAACACACTCATCAGGCCTGACGGTGAGAAGAAGGCGTACGTTCGTCTCGCACCAGATTACGATGCGTTGGATGTTGCTAACAAGATTGGCATCATCTAAACTGTGGCAGAAGAGACTTGTGGAAGAATAAATATTTGTATAAACTACAA

Function

symbol description
rpl23a Predicted to be a structural constituent of ribosome. Acts upstream of or within pancreas development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and epithelial cell of pancreas. Orthologous to human RPL23A (ribosomal protein L23a).

NR:

description
60S ribosomal protein L23a-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02893 RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777320.1 True 623 mRNA 0.48 5 20989008 20991538

Neighbor

gene id symbol gene type direction distance location
ddx52 ddx52 coding upstream 1081 20981312 ~ 20987927 (+)
heatr6 heatr6,LOC102795018 coding upstream 8276 20969831 ~ 20980732 (+)
srsf1b LOC100705065 coding upstream 23731 20960964 ~ 20965277 (+)
pigs pigs coding upstream 28561 20955254 ~ 20960447 (+)
aldocb aldoc coding upstream 36458 20944243 ~ 20952550 (+)
angptl5 LOC103355105 coding downstream 27642 21019180 ~ 21024885 (+)
trpc6a LOC104964660,LOC103355104,LOC102206828 coding downstream 45569 21037107 ~ 21048453 (+)
si:dkeyp-69c1.9 NA coding downstream 77134 21068672 ~ 21072028 (+)
nectin1a LOC100707450,LOC102209168,LOC102791255,LOC102293356 coding downstream 96552 21088090 ~ 21106213 (+)
LOC120543552 LOC101467523,LOC105355624,LOC102778915,LOC106956155,LOC106921314,LOC103142148 coding downstream 118763 21110301 ~ 21118228 (+)
G167123 NA non-coding upstream 63601 20924596 ~ 20925407 (+)
LOC120543783 NA non-coding upstream 124901 20855736 ~ 20864107 (+)
G167015 NA non-coding upstream 675499 20313244 ~ 20313509 (+)
G166979 NA non-coding upstream 794576 20138733 ~ 20194432 (+)
G166824 NA non-coding upstream 1184952 19802727 ~ 19804056 (+)
G167195 NA non-coding downstream 40830 21032368 ~ 21032748 (+)
G167196 NA non-coding downstream 41658 21033196 ~ 21033400 (+)
G167199 NA non-coding downstream 61097 21052635 ~ 21054013 (+)
G167269 NA non-coding downstream 213224 21204762 ~ 21206867 (+)
G167374 NA non-coding downstream 458549 21450087 ~ 21450349 (+)
dynll2b LOC107089378,LOC101174042,LOC103395122,LOC106514090,LOC107387006,LOC103140945 other upstream 20193 20966862 ~ 20968815 (+)
nle1 nle1 other upstream 166448 20815276 ~ 20822560 (+)
mtnr1bb LOC103354484,LOC100701643,LOC101479329,LOC101074288,LOC103475521,LOC107386965 other upstream 966476 19988882 ~ 20022532 (+)
map3k7cl map3k7cl other upstream 1142955 19835353 ~ 19846053 (+)
grik1a LOC101481540,LOC100699029,LOC104923829,LOC102784741 other upstream 1157983 19801593 ~ 19831025 (+)
layna layn,LOC100708261,LOC101467228,LOC104929931 other downstream 182456 21173994 ~ 21180752 (+)
si:dkey-71l1.1 LOC101485670,LOC102299221,LOC103355094,LOC102789525,LOC104929928 other downstream 200513 21192051 ~ 21197037 (+)
mia mia other downstream 211012 21202550 ~ 21204162 (+)
LOC120544432 NA other downstream 607545 21599083 ~ 21608848 (+)
LOC120544614 LOC103368254,LOC101478346,LOC103475446,LOC100706924,LOC104924602 other downstream 688595 21680133 ~ 21710377 (+)

Expression


Co-expression Network