rnf121 (rnf121,LOC100694640)


Basic Information

Item Value
gene id rnf121
gene name rnf121,LOC100694640
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23667325 ~ 23679248 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778558.1
TGACCATCTTATGTTTGTTGCTAATGCTAATGGACCCGGAACGGTAAAGCAGCACTCCGAAGATGGCCGGGGTGTTTGAGGTGGAGGTTGATGGTGTAGAGCATGACCATGGGCTGGGGCATCACGATGAACCGCACCAGTTTGATGTGTCCAAGCTTTCACCAGAAGAGAAGTGGAGGGTGGAGCATGCAAAAATGCATGCCAAACACAAAGGTCATGAGGCCATGCACGCAGAGATGGTGTTGATCCTTATAGTCACCCTTGTTGTCGCCCAGCTAGTCCTTGTGCAGTGGAAACAGAGACATCCAAAGTCATACAATCTGGTGACTCTGTTCCAGATGTGGGTAGTTCCTCTCTATTTTACtaccaaacttcactggtggAGGTTCCTGACCACGTGGTTTATCTTCTCTGTCATCACAGCGTACATCTCCTACCGTGCCACTCGCAAGCCACTGGCCTGCACCACGCCAAGGTTGGTGTATAAGTGGTTCCTCCTCCTCTACAAGATCAGCTATGCCACAGGAATAGTTGGCTACAGTGTCGTCATGTTTACACTTTTTGGTATAAACCTAATTTTCAGGATAAAGCCAGAGGACGCAATGGACTTTGGCGTTTCACTACTATTCTACGGTCTGTACTACGGGGTCTTAGGAAGGGACTTTGCAGAGATGTGTGCCGACTTCATGGCTTCAACTGTCGGGtattaCAGTGCATCCGGCATGCCAACCAAGCACCTCTCTGACAATATCTGTGCTGTGTGCGGTCAGCCCATCCTTGTAGATGTCAGTGAGGAGGGGATAATTGAGAACACATACAGATTGTCCTGCAACCATGTGTTCCATGAGTTCTGCATAAGAGGATGGTGTATCGTTGGAAAGAAGCAGATGTGCCCGTACTGCAAGGAGAAGGTGGATCTGAAGAGGATGTTCAGTAACCCTTGGGAGAGGCCACATGTCATGTATGGACAGCTTTTAGACTGGCTTCGGTACTTGGTGGCCTGGCAGCCGGTTATTATTGGATTTGTTCAAGGCATCAACTACATCCTGGGCCTGGAGTGACCTGGAGCAACTGTCAGAAATGGACATACACGCCATACAGAGAAGATATGCACTGGCTCAAAAGACTGAGGGCCTAACATTGaactaaaacacaaataaaatgtctatactttttgtaaatatgtatAGGCACATATCTGTATTTACAGTTCATTTGAATTTTATTGATAATCTTAATTTGGATGTCTGTGTCAATTTCCCAGGATTTGCTTCACACAGCGTTACACCTTGATAATTGGTTAGTGCATCTTATGGCCTAGTAAAGCGGTTCTAAAAATCATTAAGAGAGGTGCTTTTTACTAATTTATGTCTTAAGTGTTTGTTAATTCTTAGTTAAAGGTTTGTGCTGGAGTTTTTCATCCTCATATCTGATGAGTAATAAAGATTACATGGAAATGAACATAAGTAACCGCTCCCTGTACCTCCAAAGTACACATGCACAGTGTACACAGATGGCCTCTGGAGTCATTTTGCCATTGTCATTTACAAAATCACTCATATAGCTGTTTGACATTGATACCATATTTTGAACTCAAGTGACGTGAGTGGGTTTCCTCGTAGCCAGTCATGCGTTATGTAACGGGAGGCGTCATGGGGAAGAAAGTGCTAATCATAGTCAATACAGAGAACTCATACAGTAGTTGACAAGATGGAAACTGGATGTTGCAGGATTTCAGAATGTCCTCGCGGTCTTACGGACACTCATCCATACCAACTGACAAAACATATAGTCATATTTTCTTTGACCtttacccccccacccccttcagTAAGTTTGTATGATTTGAAGTGGAGGAATGTCACTGTCTTCCAAACAAGGTCTTCTGTTTTCACTAATGCAATCAACTATTTGTACTTAAAGGGTTAGTTCAcctaaatcacaaaaaaaaaataatctcacCTGTAGTTGAATCAAGCCATGCTGATAGTTTTGGTTTGGTTGTGCCAGCTGTTTTCTTAGGAACTACTTTCTCACAATGAAATAGTTTGATACAGTCGGACACTTTTCTGATGTCATTTTCAATGCTGAGCACAACTCAATTTAATTTACCTCTGTTGTATTGCCGTGAAAGCAGAAATCTCAGAGATGGATATCATAAAGCCAGGCCAACTAAAACCAAAACTATATGCATGGCTAAATACCACTGGATGTAAGTGAGAAAATTGTAAAGAgactcattttattttggtgaatttTACCTGTTCTGAAATTGGAGCAACCCAGAAAGCACAAACCAAAGCTATGATACCGGTTAGTAACTTGGCTAAAACTATTGAAGTAAATGTAATAAGCAGGGGAAAGAAAACAAACGTTGAACATCCTTTAACTCAGTGAGTGTGCTGATGGTGCCAGTCTTATTTTTGTGATCTGTTCAATCTGAGGTCCCGTGTATTTTCTAGTCCAAAGTTGCTGGAAGGTGGTTGGTTTTTGCAGGTACTGGTCACTGTACATGCCTCATAACTCACCAACTCACTTTTACTTTGACCTGTCTACCAACTCACACAGTAATCGGACTGTGTACAACAAAGCTAACAtgatcattttgttttgttttcaatatCAGTTAATAAATGTCATATGGTTTA

Function

symbol description
rnf121 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within several processes, including neuronal action potential; regulation of ER-associated ubiquitin-dependent protein catabolic process; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RNF121 (ring finger protein 121).

NR:

description
PREDICTED: RING finger protein 121

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15698 RNF121_175; RING finger protein 121/175

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778558.1 True 2648 mRNA 0.42 9 23667325 23679248

Neighbor

gene id symbol gene type direction distance location
LOC120544657 NA coding downstream 200 23665501 ~ 23667125 (-)
LOC120544077 LOC104954719,LOC103373429 coding downstream 11347 23626655 ~ 23655978 (-)
srrt NA coding downstream 73365 23584789 ~ 23593960 (-)
LOC120543802 nyap1,LOC103370091,LOC102779388 coding downstream 89829 23543035 ~ 23577496 (-)
atp1b2b atp1b2,LOC104937285,LOC107386508,LOC103475775,LOC101071453 coding downstream 125169 23531990 ~ 23542156 (-)
LOC120544653 LOC103367248,LOC104954773,LOC105929335 coding upstream 6977 23686225 ~ 23696226 (-)
rb1 rb1 coding upstream 18086 23697334 ~ 23717878 (-)
slc6a7 slc6a7,LOC104954653,LOC103367243,LOC104919741 coding upstream 39519 23718767 ~ 23728561 (-)
taf1 NA coding upstream 57823 23737071 ~ 23754731 (-)
fam76b fam76b coding upstream 76795 23756043 ~ 23762280 (-)
G168161 NA non-coding downstream 61020 23605559 ~ 23606305 (-)
G168041 LOC103372846 non-coding downstream 341988 23323498 ~ 23325337 (-)
LOC120544733 NA non-coding downstream 433008 23164507 ~ 23234317 (-)
G167987 NA non-coding downstream 485853 23181118 ~ 23181472 (-)
G167970 NA non-coding downstream 517920 23148941 ~ 23149405 (-)
G168238 NA non-coding upstream 84299 23763547 ~ 23764139 (-)
G168351 pafah1b2,LOC108247589 non-coding upstream 426334 24105582 ~ 24108489 (-)
G168365 NA non-coding upstream 494578 24173826 ~ 24174101 (-)
G168431 NA non-coding upstream 647183 24326431 ~ 24327158 (-)
G168452 LOC104945802,LOC106516412 non-coding upstream 650261 24329509 ~ 24330155 (-)
G168162 NA other downstream 49204 23617275 ~ 23618121 (-)
rnf167 rnf167,LOC102777964,LOC102289272,LOC101483611 other downstream 63433 23596899 ~ 23603892 (-)
mink1 mink1,LOC100692298,LOC102200963,LOC107746403 other downstream 181454 23450693 ~ 23485871 (-)
slc12a9 slc12a9,LOC103370084 other downstream 229397 23426788 ~ 23437928 (-)
LOC120543557 NA other downstream 513916 23150844 ~ 23153409 (-)
nlgn3b nlgn3b,LOC103367236,LOC101487455,LOC104954573 other upstream 116970 23796218 ~ 23811948 (-)
thoc2 thoc2,LOC102794734 other upstream 241316 23920564 ~ 23948860 (-)
LOC120544713 LOC104954531 other upstream 295306 23974554 ~ 23976321 (-)
radx LOC103366308,LOC106923634,LOC103133962,LOC106955728 other upstream 716528 24395776 ~ 24405877 (-)
LOC120543987 NA other upstream 811312 24490560 ~ 24496582 (-)

Expression


Co-expression Network