rpl17 (rpl17)


Basic Information

Item Value
gene id rpl17
gene name rpl17
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 37261748 ~ 37268763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779862.1
CTTCCATTAGGCAGAAAAAGCGGAGCGCTGTCCCCGGAACTTCCTCTTCCTTCCGCGGCCTCAGAGATATCTGAAAATGGTCCGCTACTCTCTCGACCCCGAGAACCCGACTAAATCATGCAAGTCGAGGGGATCCAACCTCCGGGTTCACTTCAAGAACACCCGTGAGACGGCCCAGGCCATCAAGGGCATGCACATCCGCAAGGCCAACAAGTACCTGCGGGACGTGGTGGTCAAGCACCAGTGCGTTCCTTTCCGTCGCTACAACGGAGGCGTGGGCCGCTGTGCTCAGGCCAAACAGTTCGGCTGGACTCAGGGCCGCTGGCCCAAGAAGAGCGCCGAGTTCCTCCTCCACATGCTCAAGAACGCCGAGAGCAACGCTGAGCttaagGGTCTGGACGTGGACTCTCTGGTCATCGAGCACATCCAGGTGAACAAGGCCCCGAAGATGAGGCGCCGCACGTATCGCGCCCACGGCCGCATCAACCCGTACATGAGCTCGCCGTGCCACATCGAGATGATCCTCACGGAGAAGGAGCAGATCGTCCCCAAACCAGAGGAGGAGGTGGCCCAGAAGAAGAAGGTTTCacagaagaagctgaagaagcaGAAGCTGATGGCTCGGGAATAAAATCTGAAATAAATCTGATTTATCACCA

Function

symbol description
rpl17 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL17-C18orf32 (RPL17-C18orf32 readthrough).

NR:

description
PREDICTED: 60S ribosomal protein L17

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02880 RP-L17e, RPL17; large subunit ribosomal protein L17e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779862.1 True 659 mRNA 0.57 7 37261748 37268763

Neighbor

gene id symbol gene type direction distance location
mfhas1 mfhas1,LOC102794566 coding upstream 8142 37205773 ~ 37253606 (+)
ppp1r3b NA coding upstream 59083 37190136 ~ 37202665 (+)
LOC120545871 NA coding upstream 99571 37137376 ~ 37162177 (+)
LOC120545292 NA coding upstream 126858 37125299 ~ 37134890 (+)
LOC120545293 NA coding upstream 171228 37085345 ~ 37090520 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107700773 coding downstream 39030 37307793 ~ 37314170 (+)
G180597 NA non-coding upstream 18031 37241548 ~ 37243717 (+)
G180596 NA non-coding upstream 18656 37238703 ~ 37243092 (+)
G180584 NA non-coding upstream 22537 37121585 ~ 37239211 (+)
G180594 NA non-coding upstream 40617 37220285 ~ 37221131 (+)
G180593 NA non-coding upstream 44022 37217453 ~ 37217726 (+)
LOC120544934 NA non-coding downstream 6772 37275535 ~ 37292054 (+)
G180602 NA non-coding downstream 7835 37276598 ~ 37276942 (+)
G180610 NA non-coding downstream 62668 37331431 ~ 37399393 (+)
G180608 NA non-coding downstream 71720 37340483 ~ 37344149 (+)
LOC120545327 NA other upstream 147977 37104207 ~ 37113771 (+)
LOC120545105 ptbp3,LOC106536240 other upstream 934352 36320335 ~ 36327396 (+)
G180414 NA other upstream 1083826 36176963 ~ 36177922 (+)
G180410 hsdl2 other upstream 1085377 36123080 ~ 36176371 (+)
LOC120545305 NA other upstream 1201225 36048606 ~ 36060523 (+)

Expression


Co-expression Network