LOC120545105 (ptbp3,LOC106536240)


Basic Information

Item Value
gene id LOC120545105
gene name ptbp3,LOC106536240
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36320335 ~ 36327396 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU244513
TGCTGCCTGGCTGCGGTGCGGAAGGCTCGCGGACCAAAACAacttttcctcttcttcctcctcttgttcttctttttttcttcctcctctttctcctcctcgtGGACCATGGACGGGAATCAGAGTTTATTTCTCTCAGCTGCTCTGCGATCATGAGCACCTCGGACCTGTCCACAGTGGATGGCCCTGATAGGCTGTGTGTTTCTGAGCGCGCTCAGTGCGTCCCGTCTCAGGTCCTTCACCTGCGTCAGCTTCCTGTTGACGTCTCTGAACAGGAAGTGCTCGCTCTGGCCGTACCCTTCGGCCGGGTCACTAAGCTACTAACACTGAAGGCCAAGAACCAGGCGTTTGTTGAGATGGCGTCGGAGGAAGCGGCCGTTACCATGGTGAACTACTACACCGCGGCCCCGCCCACCGTCAGGAACCAGCCAATCTTCATCCAGTACTCCACCCACCGGGAACTCAAGACAGACAACCTGACCAATCAGGTGACGGGCCGCCCACTTctgcacatagacacacacagacacacacagacactcacacagacacacacacacagacacacagacacacacacagacacacacacacacacacacacc
>TU244514
gtttaaCATGAATGCATGAGTAATAatgatgtaataataatgtaataattatgATAATATGAATGGGTTTCTGTGCAGGAATCAGAGTTTATTTCTCTCAGCTGCTCTGCGATCATGAGCACCTCGGACCTGTCCACAGTGGATGGCCCTGATAGGCTGTGTGTTTCTGAGCGCGCTCAGTGCGTCCCGTCTCAGGTCCTTCACCTGCGTCAGCTTCCTGTTGACGTCTCTGAACAGGAAGTGCTCGCTCTGGCCGTACCCTTCGGCCGGGTCACTAAGCTACTAACACTGAAGGCCAAGAACCAGGCGTTTGTTGAGATGGCGTCGGAGGAAGCGGCCGTTACCATGGTGAACTACTACACCGCGGCCCCGCCCACCGTCAGGAACCAGCCAATCTTCATCCAGTACTCCACCCACCGGGAACTCAAGACAGACAACCTGACCAATCAGaaagCAGAGC
>XM_039779090.1
CGTCACCAAACGGGAAGTGATCTCGTTGTTTCTGCTGCCTGGCTGCGGTGCGGAAGGCTCGCGGACCAAAACAacttttcctcttcttcctcctcttgttcttctttttttcttcctcctctttctcctcctcgtGGACCATGGACGGGAATCAGAGTTTATTTCTCTCAGCTGCTCTGCGATCATGAGCACCTCGGACCTGTCCACAGTGGATGGCCCTGATAGGCTGTGTGTTTCTGAGCGCGCTCAGTGCGTCCCGTCTCAGGTCCTTCACCTGCGTCAGCTTCCTGTTGACGTCTCTGAACAGGAAGTGCTCGCTCTGGCCGTACCCTTCGGCCGGGTCACTAAGCTACTAACACTGAAGGCCAAGAACCAGGCGTTTGTTGAGATGGCGTCGGAGGAAGCGGCCGTTACCATGGTGAACTACTACACCGCGGCCCCGCCCACCGTCAGGAACCAGCCAATCTTCATCCAGTACTCCACCCACCGGGAACTCAAGACAGACAACCTGACCAATCAGGTGACGGGCCGCCCACTTctgcacatagacacacacagacac

Function

symbol description
ptbp3 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human PTBP3 (polypyrimidine tract binding protein 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244513 True 605 TUCP 0.56 4 36320367 36323293
TU244514 False 460 TUCP 0.52 4 36321310 36327396
XM_039779090.1 False 562 mRNA 0.56 4 36320335 36323218

Neighbor

gene id symbol gene type direction distance location
LOC120545287 NA coding upstream 54660 36223794 ~ 36265675 (+)
LOC120545323 NA coding upstream 83423 36228300 ~ 36236912 (+)
LOC120545314 NA coding upstream 660508 35645554 ~ 35659827 (+)
LOC120545274 NA coding upstream 712216 35260196 ~ 35608119 (+)
LOC120545268 NA coding downstream 35606 36363002 ~ 36381752 (+)
capslb capsl coding downstream 56617 36384013 ~ 36457532 (+)
LOC120545293 NA coding downstream 757949 37085345 ~ 37090520 (+)
LOC120545292 NA coding downstream 797903 37125299 ~ 37134890 (+)
LOC120545871 NA coding downstream 809980 37137376 ~ 37162177 (+)
G180437 NA non-coding upstream 4332 36314333 ~ 36316003 (+)
G180422 NA non-coding upstream 8777 36231811 ~ 36311558 (+)
LOC120545346 NA non-coding upstream 23894 36295304 ~ 36296441 (+)
G180412 hsdl2,LOC106913027 non-coding upstream 191336 36126999 ~ 36128999 (+)
G180411 NA non-coding upstream 194179 36125441 ~ 36126156 (+)
G180445 NA non-coding downstream 123616 36451012 ~ 36451935 (+)
G180452 NA non-coding downstream 153327 36480723 ~ 36481049 (+)
G180471 NA non-coding downstream 242255 36569651 ~ 36573126 (+)
G180474 NA non-coding downstream 243249 36570645 ~ 36654034 (+)
G180489 NA non-coding downstream 348563 36675959 ~ 36676763 (+)
G180414 NA other upstream 142413 36176963 ~ 36177922 (+)
G180410 hsdl2 other upstream 143964 36123080 ~ 36176371 (+)
LOC120545305 NA other upstream 259812 36048606 ~ 36060523 (+)
G180366 NA other upstream 277908 35850922 ~ 36042427 (+)
G180382 NA other upstream 347274 35969766 ~ 35973061 (+)
LOC120545327 NA other downstream 776811 37104207 ~ 37113771 (+)

Expression


Co-expression Network