rngtt (rngtt)


Basic Information

Item Value
gene id rngtt
gene name rngtt
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24279420 ~ 24376144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781349.1
GTATTGCGCAGGATGTCGTCTGAACTACAGACATTAACCAGACCCTCGTTTGGTGACTGGAGTGACGTTATGCTAGCTAATTGCTAACTATTTGGATTTCAGGAAAACAGATAAAAAAGGATAACATCATTTTGGGATGCTAATCAGCCGTGAGTCGTAATAACCTATGTTTCGTGTACTTACCTGCCGGCCCGTCATAAGGTTGACCGGGCTTAAACTTGTTGGATGATTCTCCTGAATTAGTAGCTAAAGGGCCCTGAGTCCGCGGTGCTTGGGTGAACGACAACCGGGGATCACCGCCTTCTGAGAGAGGGAGCATCGAGCTACAGGCTAGCTAGTAATACGAGGTTTGAGTTATTATCAAGATTGGCTGCACAGAAACTTCTCCTGAACATGTCACACACCGGACCCCCTCCTCGATGGCGGAATTGTCCCAGAAGAGGACAACCTGTGGCAGGTAAATTCCTGCCAATGAAAACGATGTTGGGACCCAGATATGATGACCAAGTTGCAGAGGAGAACAGGTTTCACCCGAGCATGCTGTCTAACTATTTAAAAAGTCTAAAGGTGAAAATGGGTTTGCTTGTGGATTTGACGAACACTACGCGTTTTTACGACCGCAACGACATTGAAAAAGAAGGCATAAAATATTTGAAGCTTCAGTGTAAAGGCCATGGAGAATGCCCTTCAAAAGAGACAACTTCATTGTTCATTAGGCTCTGTGAAGATTTCGTCGAGAAGAATCCCACAGAATTAATAGGTGTTCACTGCACGCATGGCTTCAACCGGACAGGCTTTCTGATGTGTGCATACCTGGTGGAGAAGATGGACTGGAGCATCGAGGCAGCTGTGGCTGCGTTCTCCCAGGCCCGGGCCCCGGGGATCTACAAGGGAGAGTACCTCAAAGAGCTTTTCCGTCGCTATGGCGACGAAGAGGATGCGCCCCCTGCCCCTGAGCTCCCCGAGTGGTGCTTCGACGACGACGACGATGGGGATGTGGATGACGACGGTAACGCGGTTGGCCAGGAGTCGGGCCCCAGCTCCTCTGGGTCAGCGCCTGGCAAACGAAAGAAGGAGAAGCTAAAACTGGGTGCAGTATTCCTTGAAGGCATCACTGTAAAAGGAGTCACACAAGTCACCACACAACCCAAACTAGGAGAGATCCAAAGAATGTGTCAGCGGATGGCCGAGTGGGACAAGTCTGGGTTTCCTGGTGCTCAGCCTGTGTCCATGGACAGGCAAAACCTTCGTTTCCTGGAACAGAATCCATACAAAGTCAGCTGGAAGGCTGATGGCACAAGGTACATGATGTTGATCAACGGGAAAAATGAAGTATTCATGATCGACAGGGACAACACGATCTTCCACATAGCAAACCTAGAGTTTCCTTTTCGGAAGGATCCACGTGTTCACCTATCAAATACTCTATTGGACGGGGAGATGATCATCGACAAGGTGAATGGTCAGCCCGTCCCCCGCTATTTGATATACGACATCATCAAATTCAATgGACAGCCTGTTGGCCAGTGTGATTTCGGTATCCGGCTGTTATGCATGGAAAAGGAGATCATTTCTCCCCGGATGGAAAAGATGAAGACTGGACAGATTGACAAAACCAAGGAGCCCTTCAGTGTCCGAAATAAACCCTTCTTTGACATCCATGCAGCACGCAAGCTACTGGAAGGCAGCTTCACGTCCCAGGTCAGCCATGAAGTTGACGGGCTTATCTTCCAGCCATGCGGGAGATACAAGGCTGGGAGGTGTGATGACATCCTCAAGTGGAAGCCCCCCAATCTCAACTCTGTGGACTTTCGCCTCAAGATCACCAAAGTCGGGGGAGAAGGGCTGCTTCCACAGACTGTCGGCTTGCTCTACGTCGGCAGCTATGACAGGCCCTTTGCAAAGATGAAGGtgagaAAACTTCCTTACATCCTCCTGCGTTTGTTGTTTCTCTCCCCAGCTGTGTGTAAAAGCATCCAGGAGCCCGTCACGAAGGAAATCCTCTTGGAGTACGTGGACCGGTGTGCTCAAGGAGTCCAAGCCCAGAACCGGAAACACCCACCAGACCCAGACTCTGAGCTAatgccccctcctcctccaaagAGACCCAACCGGGCCATCCCATAGCCCACAGCTGGGCTCTCCGGACTGCTCTACAGTCACAGTGTACATCTACATCACCAGCCACATCAACCCCCCTACAGAAAACGGACATTTCAAGGCTTTCTTACCCTCAGCACACTTGCTTTATCAGGCTGTACATGTAAAGACTCCAGAAACCTTTGATTGACTGCCTCAACGTCATAAATTTACCTTGTAGACTTATTTGTAGCTTTAATTGCTGGTGTtcttattaaaattaaaaacatgatgcttagttttttttcctatttatcttttttaaagTCTGAGCTATTTATCAACAGGGACATTGTTATGGCTACAAAATAACACCAGACAATGCAGACCTTGTTTATGTTTTGTCAACTAGTTCCTTATTTGTATTGAAAGAGGAGTAAACATCATCAACACTCA

Function

symbol description
rngtt Predicted to enable mRNA guanylyltransferase activity and triphosphatase activity. Predicted to be involved in 7-methylguanosine mRNA capping. Predicted to act upstream of or within dephosphorylation and mRNA processing. Predicted to be located in nucleus. Orthologous to human RNGTT (RNA guanylyltransferase and 5'-phosphatase).

NR:

description
mRNA-capping enzyme

GO:

id name namespace
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0098507 polynucleotide 5' dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0004484 mRNA guanylyltransferase activity molecular_function
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004651 polynucleotide 5'-phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K13917 RNGTT; mRNA-capping enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781349.1 True 2535 mRNA 0.48 15 24279420 24376144

Neighbor

gene id symbol gene type direction distance location
LOC120546721 NA coding upstream 931 24259548 ~ 24278489 (+)
si:dkey-174m14.3 LOC102302461,LOC103359114,LOC101468873,LOC102795766,LOC102194912 coding upstream 26740 24225057 ~ 24252680 (+)
nt5c1bb LOC104946496,LOC101163217,LOC103359106 coding upstream 63460 24207326 ~ 24215960 (+)
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding upstream 210828 24030053 ~ 24068592 (+)
atp6v1d atp6v1d coding upstream 634776 23640875 ~ 23644644 (+)
cnr1 cnr1,LOC104936193 coding downstream 31927 24408071 ~ 24412330 (+)
akirin2 LOC104936192,LOC106911218,LOC103359156,LOC103457369,LOC102236332,LOC103133163 coding downstream 37703 24413847 ~ 24417800 (+)
rars2 rars2 coding downstream 43116 24419260 ~ 24436323 (+)
LOC120546425 NA coding downstream 70764 24446908 ~ 24485599 (+)
LOC120546832 ppp1cb,LOC100692170,LOC103030509 coding downstream 122602 24498746 ~ 24506389 (+)
G187027 NA non-coding upstream 44669 24211413 ~ 24234751 (+)
G186972 NA non-coding upstream 132202 24072763 ~ 24147218 (+)
G186961 NA non-coding upstream 353772 23868280 ~ 23925648 (+)
G186954 NA non-coding upstream 417486 23829525 ~ 23861934 (+)
G186905 gphn,LOC106608213 non-coding upstream 611293 23666937 ~ 23668127 (+)
G187074 NA non-coding downstream 10812 24386956 ~ 24387168 (+)
G187158 NA non-coding downstream 260581 24636725 ~ 24639484 (+)
G187165 ptprk,LOC102777941 non-coding downstream 279826 24655970 ~ 24656643 (+)
LOC120546772 NA non-coding downstream 633369 25009513 ~ 25012350 (+)
G187212 NA non-coding downstream 734902 25111046 ~ 25143492 (+)
extl3 extl3 other upstream 91556 24155487 ~ 24187864 (+)
LOC120547070 NA other upstream 132658 24144997 ~ 24146762 (+)
G186975 NA other upstream 196316 24079603 ~ 24083104 (+)
nfkbie nfkbie other upstream 689731 23578378 ~ 23589689 (+)
tcte1 NA other upstream 714991 23559498 ~ 23564429 (+)
G187094 bpnt1,LOC102799416 other downstream 130769 24506913 ~ 24507813 (+)
lama2 lama2,LOC104942190 other downstream 433935 24810079 ~ 25009457 (+)
trnat-ugu_3 NA other downstream 843724 25219868 ~ 25219940 (+)
abracl abracl,LOC103376263 other downstream 1553432 25929576 ~ 25935271 (+)
LOC120546493 NA other downstream 1579106 25955250 ~ 25968925 (+)

Expression


Co-expression Network