LOC120549192


Basic Information

Item Value
gene id LOC120549192
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 2588719 ~ 2591784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU270665
AACGGACTTCGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTATGCTGTGTTTTGGCATATTGAAATCGACAAGAGGAGACGGacatttgtgactgtaaaagagAGAGGATCGGGGAAGCTCCTCTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGCCTGCTGCCATCGCCAAGTTCCCCTTTATATCCCCTTGACTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAACCTCCTGAACCATTCCTGCTTAACTCGCCTCCACTGGACCTTGCacatttttttccatctcaACATCAAACATATTGAACGATACTCtaaaatttatatataaattgcCCAGCCATACGTCAGCCCAAACTTACTTTTCCtgacacatttaacattaactTGTACATAATACATCCTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGAGAGGTGAATGACACCAAGATATGGCagttgaagaaaaacaaatgtacagtatgtg
>XR_005637341.1
AACGGACTTCGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTATGCTGTGTTTTGGCATATTGAAATCGACAAGAGGAGACGGacatttgtgactgtaaaagagAGAGGATCGGGGAAGCTCCTCTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGCCTGCTGCCATCGCCAAGTTCCCCTTTATATCCCCTTGACTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAACCTCCTGAACCATTCCTGCTTAACTCGCCTCCACTGGACCTTGCacatttttttccatctcaACATCAAACATATTGAACGATACTCtaaaatttatatataaattgcCCAGCCATACGTCAGCCCAAACTTACTTTTCCtgacacatttaacattaactTGTACATAATACATCCTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGAGAGGTGAATGACACCAAGATATGGCagttgaagaaaaacaaatgtacagtatgtgataaCGGGACATGCAAGTCATCAATTATCAACTATTTGTTCCGcgtctcctctagctgttgtGGTTGATATGATGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAGCAAAGCACTGTGATGTCACGTGGTccttttaaatataattataaatataaaaatataaatatataccagAAACTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTGAATTTTTGatgttatttaataaatgtcatgttttatatCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270665 False 767 lncRNA 0.46 3 2588719 2591518
XR_005637341.1 True 1033 lncRNA 0.43 3 2588719 2591784

Neighbor

gene id symbol gene type direction distance location
LOC120548878 NA coding upstream 74078 2513511 ~ 2514641 (+)
LOC120549189 NA coding upstream 118264 2467954 ~ 2470455 (+)
LOC120548876 NA coding upstream 155854 2431306 ~ 2432865 (+)
LOC120548873 NA coding upstream 323841 2262193 ~ 2264878 (+)
LOC120548871 NA coding upstream 435758 2142172 ~ 2152961 (+)
yipf6 yipf6,LOC102784508 coding downstream 646839 3238623 ~ 3243462 (+)
im:7136021 LOC103129910,LOC103458072,LOC108228217 coding downstream 667751 3259535 ~ 3274871 (+)
LOC120548881 NA coding downstream 753032 3344816 ~ 3345584 (+)
ak7b NA coding downstream 778015 3369799 ~ 3384604 (+)
vrk1 vrk1 coding downstream 909587 3501371 ~ 3522832 (+)
G199650 NA non-coding upstream 46086 2542420 ~ 2542633 (+)
LOC120549194 NA non-coding upstream 88785 2497469 ~ 2499934 (+)
G199630 NA non-coding upstream 98089 2490430 ~ 2490630 (+)
G199593 NA non-coding upstream 163226 2424525 ~ 2425493 (+)
LOC120549196 NA non-coding upstream 181455 2405776 ~ 2407264 (+)
G199694 NA non-coding downstream 106865 2698649 ~ 2699027 (+)
G199695 NA non-coding downstream 107409 2699193 ~ 2699605 (+)
G199699 NA non-coding downstream 218919 2810703 ~ 2811103 (+)
G199701 NA non-coding downstream 253745 2845529 ~ 2845888 (+)
LOC120549521 NA non-coding downstream 361775 2953559 ~ 2954008 (+)
G199652 NA other upstream 40180 2547985 ~ 2548539 (+)
G199564 NA other upstream 429336 2158890 ~ 2159383 (+)
LOC120549526 NA other upstream 1487315 1099584 ~ 1101404 (+)
G199306 NA other upstream 1596707 963109 ~ 992012 (+)
LOC120549207 NA other upstream 2537833 27895 ~ 50886 (+)
G199689 NA other downstream 100689 2692473 ~ 2693453 (+)
G199885 NA other downstream 904296 3496080 ~ 3523889 (+)
LOC120549013 NA other downstream 2430874 5022658 ~ 5024934 (+)
G200129 NA other downstream 2450175 5041959 ~ 5053742 (+)
apoba NA other downstream 2508684 5100468 ~ 5187407 (+)

Expression


Co-expression Network