G43161


Basic Information

Item Value
gene id G43161
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 32839751 ~ 32842509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU57974
tttgagCAGCCGTGTGCAGGGTTCTGACCCCGAGCTCAGGCTCATTAATCACGTGCGTCAGGATGCTGCAGAAAAAAACGACCACAGAAGGTTGCCAGCACTGTGAAAACAAActcctggtaaaaaaaaaaaaaatacagcaaaaTGACAGTTTACACCCAAAAAGCCCTCCAGTTTTGTTCCGCTTAAACAAACCGCccactgaagaagaagaaaagactgAAAGGTCCTTCCTCACAGGCTTCCCTTTATGTACAGACACAATATACACAAaaggaacacacacagcagtagCATTTCACTTAGAGACTCAATGAATGTACAAATGAATGCTGTAACGCAGTCGCAGCAGCGGCAGCGCCACGCAATATCACAATATCTGCCGGTCACATTATATCAGTGCAGTGGCCTTGGAAACACTATTGTATAAACATTCCTGCTCTTTCTTTCATTATTCTGTCTTAAACGAGTTATTGGATGTATATTTAACGAGATAAAGCGATATTTCACTCAGGTGGAATATTTATGGGTACTTGAGCAGtactaaacatttttttgttgccttcaaaataagagcAGGAACAAAAGAGTGACAGAAAGGCACCTTCTGTTACAGCAGCTGAatttaaatgtaacatttataatataaaaaagaaactatTCCATCCAGGTAAAATATCGCTTTAAGAAAttagaatgaaatgaaatgcataTTAAAGTCTTTGAAAtgtatggagaaaaaaaaggattacGTGGCCTGAGAAAgaagttgtgtgtttgtgaaaatgtgaatcTTTTTGCAATTAATATATGACAAATATGACAACGAAAGTAACATTTAGCACAGAAAAACAGTGGCAAAATGGACTTTAAAGGGATATATCACTTGTATTTTAAAGTGGTTTTCTACAGCAGTTTTACTGTCAGCTGCTGGAAATGTTTATAGAGTACATAGCTCTTAGAATGAAACTGATTTCACTCAGTTGTACAGAAAATATGAATTAGTATACATAGATATTTGATGAAATGTagaaacaacattttaataGTACTTGAGAAAAGTGACATATccttttaaaggtgctgtaggtaggattgggaagatccaggacttagccaaataatttgaacatcgacaacttctcagtctctcccccctttctgctaaagcccaaaatggtctcctaagcccctccccccacaagggagaatgaatatgtgtgcatgagcagtgattgacacacagttagacctccccctggccctgattggtgcatctgaacagggagcggttgatttttgcaaatcgcactacaggctgtaggtggtaccagaggagccagattttttttttaaattacctccttcatgtagttctactggaacatagagtcagtttcagcaaatatgacagaaagttagttttaaaagtcttacctactgcacctttaacctaAGTGAAAACCAGGGTCTCTAATCTGTTTAAACGCAGACGGGGGTTGTTTTATAACTTGGCTCAGTGTTTTCACTTTTTAGTCTTGAAATAGTGTTTCATTAGTTAGTTAAAGGGTTTTGTCTtcccattatttatttttttttacacattctgTCCTAAAATGCAAATGTTGAAGACATCCAATCCAGGGGGAAATTGGCATCCCTTTTTTTAACAAGAATTGGAGCCTTTTCTTGTGTGAATTGGTAAAATAATGAGCCTTAAGTATTTCTTGATTCAGAAGCCCTTTGTATACTGGATGTATGAAACTTTACGCAGTTGTAGACAAAATAATTGAAGCTTCTTCTTCACAAGTTTATCCTTTTCCTTAcagaattattatatataattttaacatttgttttaatcCATGTTTTAATAATGACTTTTTAAGATCCTTACCTTTTGTGGCACAGATTGAATACCAAACGACCAACAAAGAGTGAAGAGTGAActtgtgtgttcatttgaagAGGTTTTCCCTCCTGATAGCAACAATCAAAGTGGAAATGAAATGCTTTGAGCTGCACTTAGCCCTGGTTTGCTCTGTGGTGTTGTGAAGAGCACAGTTACTTGTGTACAGTGTGTACAGTGCGTATTTTGTTAAAATCATACTATATCATAATCATAAACACTTATAATCAGGGTTCCAAAAAGAGCACCAtctactagccaaatgctggtaaaatatgcaagtggctggtagatttgctacACTAACCAGCCCAAAAAAGCAATGGTACTCTATTGAGTGGCTCGTGAAATATAAACATtgactagccatttggctggtggatgaaaaagttcattttgaacCCTGCTTATAATATCATAAGTGTTTATTTGTGACAACTCACAATATCAAATGTTTTAATTTCTACTCAACTCACTtataattcattttaaaaacatctaaatTAAGAATCAAATAAAGATGAATGTAGAGAGTTTTAAATGTTCTATaacagaagaaagagaaaagtcaTGATATATTCTTCCTCATGAAATTGATCCATTGAATACACAGTTTTTATGCCATGGTTTGTAGAAACGGGCCGATCTCCCCTCATAGTTTAAAAAGCGCTGCTTTGTGTGGAGGCAGTGAATCTGCATGTTATTATGTGTGACGCTCTAAAGATGTAAAGATGCCTTGTTCCTGTACTGAGGAGCTGTATACTGTAAGTAACAATGATGCTGATTTTTAGGTATGATTTTGTTAACGTGACCAATAAAATCcctgtttgttgtttttaaatctatTGTG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU57974 True 2759 lncRNA 0.36 1 32839751 32842509

Neighbor

gene id symbol gene type direction distance location
pigu pigu coding downstream 20776 32804162 ~ 32818975 (-)
mcm2 mcm2 coding downstream 39032 32784777 ~ 32800719 (-)
chd6 chd6,LOC102778367,LOC102308233,LOC101486676,LOC102201960 coding downstream 216226 32456267 ~ 32623525 (-)
ptprt NA coding downstream 572542 31814418 ~ 32267209 (-)
LOC120556662 samd3,LOC101476819 coding downstream 1267970 31560616 ~ 31571781 (-)
tmem74b tmem74b,LOC102310340 coding upstream 5020 32847529 ~ 32859255 (-)
LOC120557780 rbl1 coding upstream 30607 32873116 ~ 32889435 (-)
LOC120557781 rbl1,LOC103375195 coding upstream 47804 32890313 ~ 32896880 (-)
LOC120556763 NA coding upstream 56179 32898688 ~ 32914728 (-)
si:dkey-222f2.1 LOC104931984,LOC102780474 coding upstream 112914 32955423 ~ 32968947 (-)
G43168 NA non-coding downstream 2765 32836786 ~ 32836986 (-)
G43167 psmf1 non-coding downstream 8433 32819999 ~ 32831318 (-)
G43165 NA non-coding downstream 36423 32802438 ~ 32803328 (-)
LOC120557381 NA non-coding downstream 99673 32721079 ~ 32740078 (-)
G43060 NA non-coding downstream 383167 32441160 ~ 32456584 (-)
G43163 NA non-coding upstream 2915 32845424 ~ 32847102 (-)
G43173 NA non-coding upstream 29333 32871842 ~ 32872097 (-)
G43241 LOC104958239,LOC105940397,LOC103464819,LOC108244949,LOC103150142 non-coding upstream 179836 33022345 ~ 33042122 (-)
LOC120557801 NA non-coding upstream 217912 33060421 ~ 33065026 (-)
G43329 NA non-coding upstream 492982 33335491 ~ 33336768 (-)
podxl2 podxl2,LOC102777608 other downstream 55915 32750792 ~ 32783836 (-)
LOC120557401 blcap other downstream 92641 32688020 ~ 32747110 (-)
LOC120557755 grip2,LOC103357845,LOC102782189 other downstream 1824104 30946332 ~ 31015647 (-)
LOC120558045 NA other downstream 2160669 30638971 ~ 30679082 (-)
romo1 romo1,LOC102788570 other downstream 2709434 30125751 ~ 30130317 (-)
LOC120557803 NA other upstream 345559 33188068 ~ 33223258 (-)
LOC120557840 svbp other upstream 683988 33526497 ~ 33530867 (-)
LOC120557811 fam120a other upstream 1068871 33911380 ~ 33953932 (-)
setd5 setd5 other upstream 2016313 34858822 ~ 34925111 (-)
slc2a10 slc2a10 other upstream 2609496 35452005 ~ 35464535 (-)

Expression


Co-expression Network