LOC120561412 (lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547)


Basic Information

Item Value
gene id LOC120561412
gene name lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2365750 ~ 2434942 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804521.1
ACATCGTTCCTGTTGCTATACAACTGATTTATTCTTGATGCCACGGTCAGTCTAATCCACAGCAGACTGCGCCTTTTTCCCTCCGCTGTCCACATCTGAATCTGGATACATCCAACTTGTCGGGTTTGGACCTCAGTTTATTCCTCTCAAATGTCTTCACTTGCTCGGTTTCCGGTGTATTTTCTGCCACTTCACCTAGATTTAACAATTGGCGACTCggtgttttaaaatgtgtcttctaGCCTCCCCAAAGCACGCGCTCAACACTAGTGTCATTCTCACCAGGCTACAAGCTTGAGTGCGTCCATCCAAGGGCTGTGTGTAAGGTGGCAGTGTGAAATAAATATGCATTATCAAGCTGATGTTGTGCGGTAACGTGGGAAACTATATAGGCAGAGGTTGATGCGCACCTTTTGGAGCGGCTCACATCTCCGACAGGTGTGCGGCTGTGCGCAAAGCGGACCTGGCTGCGGCACAAAGTGCGTATATTTTCCGTACAGACAGGCGTCCTGGGTGCGTGTCCAACTATTTGGACAAAACGCCGAGTGCGTCTAACATGTGGACCTGGGACGCATGCAACAGAGAGCCATAACCATGAGGAGGAGCCGACACCGCGCAAATATGGGTCTTCTCGTGCTTTTCAGATGGCTTGTATTCACAGCGGTGGTGCCCGCCTGGCTGCTTGCTGCTCCAAGCGGCATCCGTGAGCGTCCCTGCCCCCAGAGCTGTAGATGTGATGGGAAAATAATATACTGCGAATCCAATGCCTTCCGTGACGTGCCAAGCAATGTGTCTGTAGGCACACAAGGCCTCTCCCTGCGTTACAACAGCCTGGTGAACCTCCGAGCCCACCAGTTTGCAGGCCTGAGTCAACTGGTTTGGCTCTACCTCGACCACAATTACATCAGTGATGTGGACGGCCAGGCTTTCCACGGGATACGGAGGCTCAAAGAACTGATCCTCAGCTCAAATAAGATCACACTGCTAAAAAACAACTCGTTTCACGACGTTCCGAATTTACGCAACCTAGACCTTTCCTACAATAAACTGCAGGTTCTCCGGCCTAATCAGTTTGTGGGTTTACGGAAACTACTCAGTTTACACTTGAGGTCAAACTCCTTAAAAACTGTCCCGATGCGAGTTTTCCTCGACTGTCGCAACCTGGAGTTTCTAGATATTGGCTACAACAGGCTACGGAGCCTCACGCGCAACGCCTTCGCAGGACTCCTTAAGCTCATCGAGCTTCATCTGGAGCACAACCAGTTCTCCAAGATCAACTTTGCTCATTTCCCCCGCCTGACTAACCTGCGGGCGCTCTATTTGCAATGGAACCGTATCAAACTGCTAACCCAGGGCCTGCCCTGGATGTGGACCTCCTTGCAAAAGCTGGACCTCTCAGGGAATGAGCTCCAAGTGTTGGACCCGAGTACATTTCAATGCCTCCCTAACCTGCAGACTCTTAACCTGGACTCCAACAAACTGAGCAATGTGTCTCAGCAGGCAGTGGAGGCCTGGATCTCCCTCACCACCATAAGTCTGGCTGGTAATTTGTGGCACTGTAACCCCAACATATGTCCCCTGGTGGCCTGGCTCAAGGCCTTCAAAGGTAACAAGGAGACCACTATGATTTGTGCCGGCCCCAAGGAGACACAAGGAGAGAAAGTGACCGATGTGGTGGAGGCTTATAACATCTGTACAGCGACCCCGGCCCCTGTTTCCTCAACACCATCGCCCCTGACTTCTGCTTTTCGACCTGAGCTGCTGCCTCTCCCTACACAGGCTGTCGTGGATAAGAAGCTGATCTGGAACAGGACAGCCTCCCCGTCTCCTTCCGAGGCCTCCCCCACCATCCCTTTGCCAGACACTGAGTATGTGTCCTTCCACAAGATCATAGCTGGTAGTGTGGCCCTCCTCTTATCTGTAGCTATAATTCTGCTGGTAATCTATGTCTCATGGAGGCGCTATCCCAGCAGCATCAAACTGCTTCAGCAGCGCTCGGTGGTTAAAAAGCGGCAGAAAAAGGCCCGGGAGACCGAGCGCTCCTTTAACTCACCACTGCAAGAGTACTATGTGGACTACAAGCCTTCACACTCAGAGACTATGGATGTGCTGGTTAATGGGACAGGACCTTACACATACACCATCTCAGGCTCCAGGGAATGCGAGATAAGGCGGCAGCTGAGTGCTCTGACGTTGTACAGGTGTGAGCAGTCGGTTCTGGATTACTGCCATGCCCACCTGTCGCTGCACCTCAACGTGGGCATGGAGCCCCCAACTCAGGCACTGGGAGGTCCCAGGCAAGCCAAGTACCACCCCAGCCTCATGGTTCCTCTCCCCTCCGAGCCTGCGCTGCCTTGCCCCCAGACCCACTCCCTCCACCAGTGAGCTGTGCCCACTGTGAGGCTCTGTGTTCaaactactgtactgtatgtctgctGCACAGAATCATGGTACCGATGAAACACAAGGCTGCGTGGGAGGGAACTGGGACTGGTAAAGAAGCAAAGGAGACAATTAATCTACTGCAGAGCATCTTGGACCCAGggtaatgaaaatgaaaatctttctCAGTGAAAATAAAAGGGTGCAGCAGTATTGATTAGTGAGCTTCTGACCGACCTGACCCGCGATGTCCTCAATAGGCAAAGGAGGCTGAGCAGCAGCATTGCTTTCCACATTCTGCTCTGCCTCTTAAGGTGTATTAAGGCTAATAAATTAATGATTTGTTAATCTTATTAAAACATTTCCTCGACTGATCCTTATCCGGGCACCCCTCCACTGCGTCAGGTAAGGTAATCAAATGCAAAATGCTATTAACAGAGCAGGGGAACAGCATGATGAGCAATTGAGTAGCAGAACAAATGAAAGCTCAGCCAAGCTCAAAggttttctgctgcttttttctGATCACCCTGTCAGTCAGAGGTCTCTCTCTAACTCACGTCCCCGTGGCGCTTCTCATCTCGAGAGATGAGCCACCCAAATGAAATTACCCAGGATGAGGGAAACAAGTCAGAAAACAACAGACAGTGATTGTCATATAAAATGTACAGCCTACACATCTTGCCGGCAGTAAGTATAATTTACATGGTGACTTTTGATTTCCTAAATGATTTAGGATGTATAATTAATTTAATCAAGCTGAGAAATaaacagatgaaaaataaa
>XM_039804522.1
ACATCGTTCCTGTTGCTATACAACTGATTTATTCTTGATGCCACGGTCAGTCTAATCCACAGCAGACTGCGCCTTTTTCCCTCCGCTGTCCACATCTGAATCTGGATACATCCAACTTGTCGGGTTTGGACCTCAGTTTATTCCTCTCAAATGTCTTCACTTGCTCGGTTTCCGGTGTATTTTCTGCCACTTCACCTAGATTTAACAATTGGCGACTCggtgttttaaaatgtgtcttctaGCCTCCCCAAAGCACGCGCTCAACACTAGTGTCATTCTCACCAGGCTACAAGCTTGAGTGCGTCCATCCAAGGGCTGTGTGTAAGGTGGCAGTGTGAAATAAATATGCATTATCAAGCTGATGTTGTGCGGTAACGTGGGAAACTATATAGGCAGAGGTTGATGCGCACCTTTTGGAGCGGCTCACATCTCCGACAGGTGTGCGGCTGTGCGCAAAGCGGACCTGGCTGCGGCACAAAGTGCGTATATTTTCCGTACAGACAGGCGTCCTGGGTGCGTGTCCAACTATTTGGACAAAACGCCGAGTGCGTCTAACATGTGGACCTGGGACGCATGCAACAGAGAGCCATAACCATGAGGAGGAGCCGACACCGCGCAAATATGGGTCTTCTCGTGCTTTTCAGATGGCTTGTATTCACAGCGGTGGTGCCCGCCTGGCTGCTTGCTGCTCCAAGCGGCATCCGTGAGCGTCCCTGCCCCCAGAGCTGTAGATGTGATGGGAAAATAATATACTGCGAATCCAATGCCTTCCGTGACGTGCCAAGCAATGTGTCTGTAGGCACACAAGGCCTCTCCCTGCGTTACAACAGCCTGGTGAACCTCCGAGCCCACCAGTTTGCAGGCCTGAGTCAACTGGTTTGGCTCTACCTCGACCACAATTACATCAGTGATGTGGACGGCCAGGCTTTCCACGGGATACGGAGGCTCAAAGAACTGATCCTCAGCTCAAATAAGATCACACTGCTAAAAAACAACTCGTTTCACGACGTTCCGAATTTACGCAACCTAGACCTTTCCTACAATAAACTGCAGGTTCTCCGGCCTAATCAGTTTGTGGGTTTACGGAAACTACTCAGTTTACACTTGAGGTCAAACTCCTTAAAAACTGTCCCGATGCGAGTTTTCCTCGACTGTCGCAACCTGGAGTTTCTAGATATTGGCTACAACAGGCTACGGAGCCTCACGCGCAACGCCTTCGCAGGACTCCTTAAGCTCATCGAGCTTCATCTGGAGCACAACCAGTTCTCCAAGATCAACTTTGCTCATTTCCCCCGCCTGACTAACCTGCGGGCGCTCTATTTGCAATGGAACCGTATCAAACTGCTAACCCAGGGCCTGCCCTGGATGTGGACCTCCTTGCAAAAGCTGGACCTCTCAGGGAATGAGCTCCAAGTGTTGGACCCGAGTACATTTCAATGCCTCCCTAACCTGCAGACTCTTAACCTGGACTCCAACAAACTGAGCAATGTGTCTCAGCAGGCAGTGGAGGCCTGGATCTCCCTCACCACCATAAGTCTGGCTGGTAATTTGTGGCACTGTAACCCCAACATATGTCCCCTGGTGGCCTGGCTCAAGGCCTTCAAAGGTAACAAGGAGACCACTATGATTTGTGCCGGCCCCAAGGAGACACAAGGAGAGAAAGTGACCGATGTGGTGGAGGCTTATAACATCTGTACAGCGACCCCGGCCCCTGTTTCCTCAACACCATCGCCCCTGACTTCTGCTTTTCGACCTGAGCTGCTGCCTCTCCCTACACAGGCTGTCGTGGATAAGAAGCTGATCTGGAACAGGACAGCCTCCCCGTCTCCTTCCGAGGCCTCCCCCACCATCCCTTTGCCAGACACTGAGTATGTGTCCTTCCACAAGATCATAGCTGGTAGTGTGGCCCTCCTCTTATCTGTAGCTATAATTCTGCTGGTAATCTATGTCTCATGGAGGCGCTATCCCAGCAGCATCAAACTGCTTCAGCAGCGCTCGGTGGTTAAAAAGCGGCAGAAAAAGGCCCGGGAGACCGAGCGCTCCTTTAACTCACCACTGCAAGAGTACTATGTGGACTACAAGCCTTCACACTCAGAGACTATGGATGTGCTGGTTAATGGGACAGGACCTTACACATACACCATCTCAGGCTCCAGGGAATGCGAGGTATGACCGTTGCCCTCCAAAAATCCATTTCCACTGCGAGGCATGAGAGATAAGGCGGCAGCTGAGTGCTCTGACGTTGTACAGGTGTGAGCAGTCGGTTCTGGATTACTGCCATGCCCACCTGTCGCTGCACCTCAACGTGGGCATGGAGCCCCC
>XM_039804523.1
ACATCGTTCCTGTTGCTATACAACTGATTTATTCTTGATGCCACGGTCAGTCTAATCCACAGCAGACTGCGCCTTTTTCCCTCCGCTGTCCACATCTGAATCTGGATACATCCAACTTGTCGGGTTTGGACCTCAGTTTATTCCTCTCAAATGTCTTCACTTGCTCGGTTTCCGGTGTATTTTCTGCCACTTCACCTAGATTTAACAATTGGCGACTCggtgttttaaaatgtgtcttctaGCCTCCCCAAAGCACGCGCTCAACACTAGTGTCATTCTCACCAGGCTACAAGCTTGAGTGCGTCCATCCAAGGGCTGTGTGTAAGGTGGCAGTGTGAAATAAATATGCATTATCAAGCTGATGTTGTGCGGTAACGTGGGAAACTATATAGGCAGAGGTTGATGCGCACCTTTTGGAGCGGCTCACATCTCCGACAGGTGTGCGGCTGTGCGCAAAGCGGACCTGGCTGCGGCACAAAGTGCGTATATTTTCCGTACAGACAGGCGTCCTGGGTGCGTGTCCAACTATTTGGACAAAACGCCGAGTGCGTCTAACATGTGGACCTGGGACGCATGCAACAGAGAGCCATAACCATGAGGAGGAGCCGACACCGCGCAAATATGGGTCTTCTCGTGCTTTTCAGATGGCTTGTATTCACAGCGGTGGTGCCCGCCTGGCTGCTTGCTGCTCCAAGCGGCATCCGTGAGCGTCCCTGCCCCCAGAGCTGTAGATGTGATGGGAAAATAATATACTGCGAATCCAATGCCTTCCGTGACGTGCCAAGCAATGTGTCTGTAGGCACACAAGGCCTCTCCCTGCGTTACAACAGCCTGGTGAACCTCCGAGCCCACCAGTTTGCAGGCCTGAGTCAACTGGTTTGGCTCTACCTCGACCACAATTACATCAGTGATGTGGACGGCCAGGCTTTCCACGGGATACGGAGGCTCAAAGAACTGATCCTCAGCTCAAATAAGATCACACTGCTAAAAAACAACTCGTTTCACGACGTTCCGAATTTACGCAACCTAGACCTTTCCTACAATAAACTGCAGGTTCTCCGGCCTAATCAGTTTGTGGGTTTACGGAAACTACTCAGTTTACACTTGAGGTCAAACTCCTTAAAAACTGTCCCGATGCGAGTTTTCCTCGACTGTCGCAACCTGGAGTTTCTAGATATTGGCTACAACAGGCTACGGAGCCTCACGCGCAACGCCTTCGCAGGACTCCTTAAGCTCATCGAGCTTCATCTGGAGCACAACCAGTTCTCCAAGATCAACTTTGCTCATTTCCCCCGCCTGACTAACCTGCGGGCGCTCTATTTGCAATGGAACCGTATCAAACTGCTAACCCAGGGCCTGCCCTGGATGTGGACCTCCTTGCAAAAGCTGGACCTCTCAGGGAATGAGCTCCAAGTGTTGGACCCGAGTACATTTCAATGCCTCCCTAACCTGCAGACTCTTAACCTGGACTCCAACAAACTGAGCAATGTGTCTCAGCAGGCAGTGGAGGCCTGGATCTCCCTCACCACCATAAGTCTGGCTGGTAATTTGTGGCACTGTAACCCCAACATATGTCCCCTGGTGGCCTGGCTCAAGGCCTTCAAAGGTAACAAGGAGACCACTATGATTTGTGCCGGCCCCAAGGAGACACAAGGAGAGAAAGTGACCGATGTGGTGGAGGCTTATAACATCTGTACAGCGACCCCGGCCCCTGTTTCCTCAACACCATCGCCCCTGACTTCTGCTTTTCGACCTGAGCTGCTGCCTCTCCCTACACAGGCTGTCGTGGATAAGAAGCTGATCTGGAACAGGACAGCCTCCCCGTCTCCTTCCGAGGCCTCCCCCACCATCCCTTTGCCAGACACTGAGTATGTGTCCTTCCACAAGATCATAGCTGGTAGTGTGGCCCTCCTCTTATCTGTAGCTATAATTCTGCTGGTAATCTATGTCTCATGGAGGCGCTATCCCAGCAGCATCAAACTGCTTCAGCAGCGCTCGGTGGTTAAAAAGCGGCAGAAAAAGGCCCGGGAGACCGAGCGCTCCTTTAACTCACCACTGCAAGAGTACTATGTGGACTACAAGCCTTCACACTCAGAGACTATGGATGTGCTGGTTAATGGGACAGGACCTTACACATACACCATCTCAGGCTCCAGGGAATGCGAGGTATGACCGTTGCCCTCCAAAAATCCATTTCCACTGCGAGGCATGAGAGGATCTCCATTAGTCTTCACCGTAGTGAAGACTGTATTTCCTGGTGACTGTCGGGGCGGACGGGTCATGCCGTGGGCTGCGCACTGGATCAGTGCTGTGCTCCTGTGTCGGGCGGTGGCACACAACTTGCATCTTACTTTGGATCATCTTTTACTATTTCAAAGTGCACCCAcactttagattttcttttcctaGACATTTTCAGGTAAAGATTTAAATTCCTGCCGTCAAGATGCTCCTCCATCGGTCCCGGATCAtggaaagtgaaacttaaatcTGTCATGGGCGGTTGGATTTATTCACGCACTTATAAAGATTTATTAAAAGCTTCTttctttgcacatttttatttacagcGTTACATGTTGATATCTATGTCATAATATGACAACCCGGAAGCACATCCAGTttttgaccacacacacacacaacaccacaacacTACACAGTCATACAT

Function

symbol description
lrrtm4 Predicted to enable heparan sulfate proteoglycan binding activity. Predicted to be involved in regulation of synapse assembly. Predicted to act upstream of or within AMPA glutamate receptor clustering; positive regulation of synapse assembly; and regulation of presynaptic membrane organization. Predicted to be located in postsynaptic membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular matrix; extracellular space; and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804521.1 True 3168 mRNA 0.50 3 2365750 2434942
XM_039804522.1 False 2322 mRNA 0.52 3 2365750 2434047
XM_039804523.1 False 2671 mRNA 0.50 3 2365750 2418169

Neighbor

gene id symbol gene type direction distance location
LOC120560154 nefl,LOC102797482,LOC104959585 coding upstream 99007 2262909 ~ 2266743 (+)
klhl22 klhl22 coding upstream 162684 2192912 ~ 2203066 (+)
LOC120560792 gnrh1 coding upstream 205123 2157612 ~ 2160627 (+)
kctd9a kctd9 coding upstream 209161 2140097 ~ 2156589 (+)
ccdc92 ccdc92 coding upstream 311269 2037572 ~ 2054481 (+)
LOC120560453 NA coding downstream 103012 2537954 ~ 2539133 (+)
anapc5 anapc5,LOC102800026 coding downstream 125807 2560749 ~ 2577050 (+)
lrrc75ba lrrc75b,LOC104956515,LOC102775864 coding downstream 165948 2600890 ~ 2616973 (+)
asphd2 asphd2 coding downstream 195562 2630504 ~ 2634683 (+)
cabp1a cabp1,LOC100709699,LOC102206763,LOC102781601,LOC104946293 coding downstream 205210 2640152 ~ 2654597 (+)
G58478 NA non-coding upstream 233476 2131948 ~ 2132274 (+)
G58382 NA non-coding upstream 275957 2074820 ~ 2089793 (+)
G58390 lgi3 non-coding upstream 294267 2067585 ~ 2071483 (+)
G58384 NA non-coding upstream 302748 2062620 ~ 2063002 (+)
G58383 NA non-coding upstream 303181 2062074 ~ 2062569 (+)
G58574 NA non-coding downstream 1442 2436384 ~ 2437472 (+)
G58597 NA non-coding downstream 88497 2523439 ~ 2523638 (+)
G58598 NA non-coding downstream 88699 2523641 ~ 2523934 (+)
G58599 NA non-coding downstream 89265 2524207 ~ 2524567 (+)
G58601 NA non-coding downstream 91110 2526052 ~ 2526270 (+)
dock5 dock5 other upstream 53085 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 1527889 789405 ~ 837861 (+)
LOC120560799 NA other upstream 2153367 210742 ~ 212383 (+)
lman2lb NA other downstream 443432 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 1000223 3435165 ~ 3522756 (+)
G59086 NA other downstream 1682337 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 1989199 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 1997229 4432171 ~ 4432253 (+)

Expression


Co-expression Network