G58574


Basic Information

Item Value
gene id G58574
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2436384 ~ 2437472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU78740
gaTTCTATAATCTAGATCGGAAGTTTGCCGTATtagcagcagcaaacaactggaaacattttacaatttccatctgctttttcaccactaaattcacttctgagacttttttatgcaattaaattaactgtgtagagtttgaatatgggcagttttacaaacgttgatggccaactacacattttctccgatgttgtcagaagcttcagtctgacgggacagccagctggtggcggccGGGATCGCCTCCCTGCTGGCCGGCCAGTGATGCTTACAGACAccgctgtcagctggaagtctgaaaaagtacacgggctgtacaaaaggccgtcaatcaggagtgattgttgtgagtagCCTACAagttggagaatagcgcggacacgcacctcacaccgcgcgcaccacccggagaaaaaagtgagagaaagaaaatggagaggtcgcagttcggacgatgactatccggttgagattgtgtgcgtgtgtgcgtcctcgagatctgacgacacacaaacacacgtagcagagctacccacacccatgtttctactgttgcttaattaaatataactagtgcgaagttggaaaccagaatcagctttaaatacagttctaatttagtcctcactaacacgggcccaattatagtaactacatgaaaacttcacggttgttgcatgaaatgtcgtttgtgtttagcctacatcatcattttctatcatgtgaaataagaggccaagcctGGCCGAGGTGGTGAAGCTACAGACAGACGCTCAACAGTGTGCTCCTCAGCAgtctgctccccctgctgctcataaggtgcctctgcacccctgtCGTTtaagaccctcccaccagcctttgggccacgcctcctcatttacattgacatgtgtcaagtccaaatgaaaaggcaatgttaaatggaaattcaaaagccaaatattaaatgaaaattaaaagccaatgttaaattgaaattcaaaagccaaatattaaatgaaaattaaaagccgatgttaaattgaaattcaaaagccaaatattaaatgaaaattaaaagccaatgataaattgaaattcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78740 True 1089 lncRNA 0.43 1 2436384 2437472

Neighbor

gene id symbol gene type direction distance location
LOC120561412 lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547 coding upstream 1442 2365750 ~ 2434942 (+)
LOC120560154 nefl,LOC102797482,LOC104959585 coding upstream 169641 2262909 ~ 2266743 (+)
klhl22 klhl22 coding upstream 233318 2192912 ~ 2203066 (+)
LOC120560792 gnrh1 coding upstream 275757 2157612 ~ 2160627 (+)
kctd9a kctd9 coding upstream 279795 2140097 ~ 2156589 (+)
LOC120560453 NA coding downstream 100482 2537954 ~ 2539133 (+)
anapc5 anapc5,LOC102800026 coding downstream 123277 2560749 ~ 2577050 (+)
lrrc75ba lrrc75b,LOC104956515,LOC102775864 coding downstream 163418 2600890 ~ 2616973 (+)
asphd2 asphd2 coding downstream 193032 2630504 ~ 2634683 (+)
cabp1a cabp1,LOC100709699,LOC102206763,LOC102781601,LOC104946293 coding downstream 202680 2640152 ~ 2654597 (+)
G58478 NA non-coding upstream 304110 2131948 ~ 2132274 (+)
G58382 NA non-coding upstream 346591 2074820 ~ 2089793 (+)
G58390 lgi3 non-coding upstream 364901 2067585 ~ 2071483 (+)
G58384 NA non-coding upstream 373382 2062620 ~ 2063002 (+)
G58383 NA non-coding upstream 373815 2062074 ~ 2062569 (+)
G58597 NA non-coding downstream 85967 2523439 ~ 2523638 (+)
G58598 NA non-coding downstream 86169 2523641 ~ 2523934 (+)
G58599 NA non-coding downstream 86735 2524207 ~ 2524567 (+)
G58601 NA non-coding downstream 88580 2526052 ~ 2526270 (+)
G58603 NA non-coding downstream 93020 2530492 ~ 2530723 (+)
dock5 dock5 other upstream 123719 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 1598523 789405 ~ 837861 (+)
LOC120560799 NA other upstream 2224001 210742 ~ 212383 (+)
lman2lb NA other downstream 440902 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 997693 3435165 ~ 3522756 (+)
G59086 NA other downstream 1679807 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 1986669 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 1994699 4432171 ~ 4432253 (+)

Expression


Co-expression Network