G215493


Basic Information

Item Value
gene id G215493
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22788216 ~ 22797514 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU255291
AGACATTTCGCATGTTATCTACTCGTAAGTTTGTGGTGCGCATTATTGGATGCAATTACGTGGTTTGAGccataaataaaacttaaactGAGCAATTTCAGCGAAGGCCATGATCAGACACGGTTGTCATTATGGTGTGGTCTTGAGTCGGGGAATCCCCACGTCTGATTATATGATTGGTGGGAACTCAGAGTGAAAACGCAGTCTTGTTGAAGAACTCAACCGTTACTCGTCGCCTGTGATtgtgatgttaaataaatattaaaaccggctcctacattacccacaatgccatatGACTTCCTGTTAATAGTGGCGGCAGTGGAGTTTAACCCTTgattcatctctacctaaagagagtgatgcagctacgctttagtccttcagcctgtccagctctctcacctcctcctcATAGTATCGAGGTGACTCTctgttgtttgtctgtctcttatAGGTgaattgcattctgggacttggTATGGCATCCTCCATTTGTACCAAATACAAAGCAAATAATGCTGAGAAAAGCGGATACTGTAAGCCTGTAATTGATGAGAGTCTCTAAAAAAAGGCATCTGAATGATCCTACAGTTGTTCCTCACTCTGCTTTCTTGTGCATTACGCTTGCCAAGAGCGCGAGATAAGACTCGGCTTATCAGCAGTTCATAATCGCACCCTCGGGACCGAGAAGAGCGAGTGGATTTTGTGCAAAGGCAACATGAAGGACAAGGCGAGAATAAGGCAGAGTCAACAGCAGTACGGTGATGTTTAGGAGAGTAAGAACAGGCTTGAGACATCCTGCAGTGCATGTCTATAGAAGGCCATGGCATCGAGGGATAATTTAGCAGCGTGTCACGTACAGGAaatgtatactgtacataagcGGATGGATGCTAAATGCTGACTCACTGTCTACGGACACTCAGGTGTATTGCGTTACTCTACTGAACTAGATGAAGAGAAGCAAAAACACCCTCGGGGAAAAACAAAGACCGGAATGGGGTTAATCTCGGTTAAGTGGAGATCACAGAGCACCCACAGAGGATAGAAACTTCTCCATGTTTCTACGAGACCTGTGTAAGGCGTTTAAAACCGAGAAATTAAAAGTTTGATTCTCAGAAACATGATCATATATGAACTAGGGATGAGTGATATGACAATCTAATGTTGAGATCATAAATAAACTCACTATACACACTAAGATTACTCCAGTGTTACTCGATAAAAAGGAGTAGATTTGATGTTATATAAAGCTTTTcctatgttttttccccaatagtaataaaaataaaataaaagcatgatatatatatacatcatgtatatatataaaagcatgaTTAAAGTCAGCACACCAagatgttatgttttattccttacttaacatcACAGAATTTTAATGCTGATTCTATACAGACGATCGAGATTAGGGTTAGTCCTGTAGAAGGGATCCCCAATGCCAGCAAAGTCGATTCCACGACACCTCACTACACTCTCCATTAACTCAAAAACAAGAAGCAATCTTGACACCAGGTGTCCATAAAGAGTTCCACAAATTTCACTCCAGAGGTGAACATCTGGTTGACAAAGACGTCAAATAAGGAACTGTAGTGAGAGTCAACAGCTAACTGGTGAAGGCTTTATCAGTCAGAACAAAGCAGCAACACCTGTTTCAATACAGATTCGATTCCTTAATGTTAGACACCAAAGGATTTGTTGTCAGATCAGCCGTTTCCTGAGTATACAAAATTCATTCAACTCACTCAGGAACAGAGAATCAGAGCCAAAGACTTCGTTTACAAACGGATTAACGCAAAAACATGACTCGGCAAAGAGCCCCTGCTGGAACCATGTTTCCAGCCAAATGAATCCCTGCTTCAGTGAGTCTCCATtttgttttgggaaaaaaatgtttatcagtcaggtttcttTTCGCAATTTGTAATCTATATAGCATGAGAATGGTTCTGCTAATTTCTCCATATGTTCAGTTTGTATCATAAGATTACAGTGTTCAATATGTACATTAGCCAGagataaacaaatatatattttccataGTTTCTTTATCTTTTGTAGAACAGGATTGCTTTGCTGTGAGTAGTATAAGTCTGATTCATAACTTATGGTAATTGTGTGCTGTCTCTTTAAGAGCTTTGTGACTTAGAGGTCATTGGTTAGTACATTGCAAGCTTTGGAAGCACAGAGGTTTTTGTCTATTGAATATCctagttttcatttattttgtgaacTTGTGGAataaatgtggaaaataaatgGTGGAGATCATTCTGCTCAACCATAAAACAGTCTTCAGGGTGGTTTATTGTGAAACTTAATGACTAGACGCGAGTAAGTTATGTCCACAGCTCGGTCACGCAGTTTTCACGCATACAACGTTCAGTCCCTCGGGAGTGCTTCTATTGTCACAGGTGATCTGGTTTCATCAGGTTACATCTCGACGACGTGTGTGTTCCCAACGCCTTAACACAACCTTCACCTCCTCGTGAAGCAGCAGCAAAACTTTCGACATCTGTAGCACACATGGTTCACAAGGCCTCTCTTGCGGCATTTGGTCATTTCCTGTCCTGAATCCTTCCCTCGACACTCCACCCAGAGTTTTACAGCCTCACGAGTCCACAATCCTTTCAGCCCTCTGTCTGGACTCCAACGtaacacagctttaaaaactaaaatgtaacatttattttaccaGCATTCATTCAGTCTCCTGTTCTTTGAGCAGTTAGTGCAAGTTGCCCGTTTTGGCTTAGCATAAAGCTTAGAATTGTCTAAATAAGGaaaacactcagggacatgctattataggaaaataatcaacaactaaGTGGTGTGATGCAATCTGACATTTAGCaatctgagttactgttaccgcccAGAACAGCACGTCCCGAAGTTTGCCggtgattacattttttatttattaataaacaatgacagtttttatcagtttatagccACATTTAATGCTGTAAGGCACCCAGGAAACAAGTACCACAGCTATAATCAGCCGTTCACCAGATTTCAATGAGACCAAAACAGTTTTGGCTCACTctaattaaacaatatttatacaGTAGTGTGGTTAAACGctcagatctgattggtcagaaggtgtgcctTATTTTCgtgtaacagcacagctcaaAATGTAGTTCTTGCTGTAAAATGAActatagatttatattaatgtgctcgttattgtttctatagtaacaacccaTACACAGTGACTTGCACGGTGGACATTCCACATTAtccaagactaataataataaacagaagtgGAATAACGCGctccagactgtgctgttaagcgaaaataatgcacttccaGGGAGTAGTGGCACTTCCCTTGCGCGTTGTGCCATATCACACCCACCTCCCCCACGgcgtttattattttcatataacagcatggtctgtcgTGTGTTTTTCCTTACTTATTTTTGAGCTCAAACAGTACTCTGCAAAATcatgtgctttttgtttttcccgTACAGGTAAAAAGAATCATTTCAATCTAGTAAATGGGTACCTGGCTTAAAAGATCACTGAAAATGGGCATCCAAAAAAGTTTTAGAAAGAATGTATCAGAGAAACCACAGCCAGAGAATGTGAGAGTAAGAAGGAAAAGCCAAAATAAAGGAGAGCAGGCCTGAGTGGGAGTGCAAGATTTTGAGAAGCTGAGTAAATGAAACGTATAAAGGAGGACACTGAGGAGAGCGATGAGGCTCTGAGGGCCGTGCTGATGGACAGAAGCACCTGCGTCCTGGGCTCAGGTTCAGAGCAGCTGTTCCTCCACTCAAAGCAGGACAGCAGCAAAGTGCTGAGCTCGGGCCTTTCATACGACACCATAAACTCCTTCGGTACTGACAAAAAGCGTGTCCTTTCACACGTAGAGATCAAACCATTGGCGCATATTCAACAGAACACATCTGCTATTACGTACTGTAGGAGAGATACCTTCCACAAGTTCAAGGAGTATAAGAGTGTGCAGGTAACACGAATACCAGGGCACAAGATGATGTCAAGATACTGAAGAAACCCCTTAAATTAACTTAGCAATGCTCAAGTGCCTTTTAAATTTCACCTCTGATCATGTGTAGACAACTGCTTCACCTTCACCACCAGCACTTCATTCTagtcacatttcatttttatttcttccactGCCTCTTTCGGTGGGGGGCTGGAAGACACCATTGCGTCAGATCCAAAAATACCTACCAGGGAAGAGCTCGGAGTGCTCAGAGAGCTCTTACGTGAAAAAATAGACCCCCTCTACAAATCCTTGTTTCAAAAATTCGGCCACAAAGTAGGCTTCATTCCTGACGTGGCTGGGAATCAGATCAACAAGAAATGACAGATTTTATGAGTGGAAGCGCTTCGTGCTGAGCGCTTGTCAAATTTATGTCTCTCGCAGATCATTAAACGTCAGGAGTAATGCGGGCTCAGGGACGCAGAGGAGAACAGAgccataaagacataaagacatgAAGACATAATCGAGGATAAAAAACGGAGAGAGACGTGTGAGAACGCATCAAAAAGGTTACATCATAATTACAGCTCAGCTCGTGTTCAGACAAAATATGTTGATGCAAACCAGATGAACGATCCGTCACAGACGTAGAAACTAACATTAAACATCTGCTGGAAATGTTGCGTAaacgttttcttttctttacaagTCACAGGCATGTACAAACTCTTCCAAAGAATCCTTGCCTCACTCCATGAGGAAGAAAAGTGACAAGCTCAGACTCCACGATGAGGGAAAACACAAGAGGCCACTGTGTGTTGTCAGGAGTGGGAAAGCGGTGCTAAAAATGCTTGGAATGCTGGAAATTTGTGCCAATCAGGGAGATCCTACAGACAGCCCACGCACACTGAAGAACTCAGAATGAAGATCCGCGATTCGACCAAGTCCAAAATGAATGAGTTAATCGGATCTGATCACTTGCAGCCCATGGATGGTTGTATGACCATGGATGGATAAAAGCATGGACACAATCACAAAAGAGGGAaggaaaaagagggaaaaagtaAACCTGACACACCACTCTGGTTCACCATGCTGAGAAGAAACCTAGCTCTTAGTTTTGCCCATTAAGGACAAAAAAGTCAAGAGGAAAGCAATGAAACAGGGCATGAAGTTCTGACTCAGTGTATGAATCACACCTGTGAGAACAGTCACGGCTCCAGTCACGGCTCCAGTCACGTCAGACTAACATCAGCCCTAATTTTCCTGTACTATTTCATTACCGTGTCACTCGGGAGGTGAAGTCAGAAGAGGTGTAGCGAGTCTTTTCTGCTTCGGTCTTCTAATCTGCAGGTACCGCAAAATGGTTTGTGTGTTGCTATCAAAAGACTCCAGGCATTGAGGACTCTGGCCCTCTTAATGTTCTGAGAtgttctcaaacattttttcacttggaaaaaaaaaacaacaaaaacgaAACCTAAATCTacattgttgctgttgttcctctttcggctgctcccgttaggggtcaccacagcggatacattcatatttgatttggcccagtttttatgccggatacctttcctgacgcaaccctccccaattttatctggacCTGGGAGCGGCCCTGAGAGCGcgctgttgcacgcaaccccagtggctggggctggttccctggctgggagatgaacccgggccgcagcgatgagagcgctgtggcctaaccactagtcctccagggaccccccTAACGCTACACTGTATACGCATTAATTACACCAAAGCGCTGTTGAATGGgcaaatctgactggtcagaagatTTATTTTGCAGGTGATCCTCTGCGATTTTGTTTCCGTCCAGATTGGCCTTGTCAATGTTTTTCTCCATCCTCCTTTGAGAAAATCATATGACCACATGATGCAAACATTCGGGTTCGTAACCCGCTTGAAACTCGCTCCATCTGTGCTCATTATATTGCTGTCTGTACACGAGAGTTTTATTACAGAggagaaatgtaaaataaaattattatggACGTTATATTAAGGACCCCTGATCAACCAATCTTTTTAATTAAGTTATTTTCATATTAGAGAGTCACGTATTCAAATACCAGCTGACAAGAGAAACCCAGTGGAGTCTCAGAGACCAGACTGAGAGAGCGCGTACAGACACGCTCACGTTATTGCGCAACACTCGGCTTTTACTCAGACATGTGAGGTCATCGGAAAGCCGAAAGCAGGCGTGTTGCGTGTCGTCTACCTCGCATCCAGGTGATCCTCTCAGTCAATGATCTCAACCTTAACTCCTGACCGGTTTCAAAACAGATGCGGCTCCGGGTCGAGCAGAGCTCGTTAAAAAGTCGTAAATCCAATCATAAAACGTGACATGGGGGaagagaaacaagaaaacagaCGACTGACTTTACACTGTATTGCGTTTGACACTATAAAAGTGAAAGATGTTATCAATGATATCTTTTCTGGCACAAAGGTAAAATAATGTTTGCGTCATGTGCATATCATCTATGACATTTTGCCCAAAAACCCTAGCCATGGAAGAGCAAGCATTTTCAATGAAGTTTGAGCAAACATGATTAAACATTACAGTTAACAAAACTTGTTAGAACAAGCTCAAATTTCAGCTACTGAGTTATGAAAGCTTTCTGAGAACTTTGCATTGCGTTATTCACACTAGACCATGTCACCAAGCGCATTCGAAGCCATAATTAGCTGCCTCACAGTATCGCTTTGAATAAGGTCGTCTTCATATTTGGTCCAAATACTCGAGTCTAGAACCCGAGACTGATTCTGGGCTCATAATCGCAGGTTTGCGTTCACATAGAAGAATTACTTCCATGTCATATTTATGCATGCAGGTTcactgctttttattattattattattattattattattattttgctgtgGCACCAACACTCAAGCGACAAAGAATAATGCTTTTTGGATGTCATCGTGCAGGAATACCTGCAAACCAGGAACTGATCACATATGCAGGTGGACATGAGACGTGCCTTTATTCACTGCGCTCTTATTTCCGCTGCTTCACAAAAGTAGAAACTGGAAGTAATGCGACAAGTTGAACCAATCATGTTATTCGGCATGTGAGGCCAAGTGTAGACAGCTACCACCTTTACCTTATGCGGACTGTGCCATGATCCGTTTCAAGTGAAGTACAGATTATCGTTTTTAAAAGGACTGAGGATCGGATATCATTGGACTGCTCCCAGGCTCGAAAACAACGTTCacgagtgtaaaaaaaaatcctgttcaGTGCAATCCTGATCAATGTAGAGATAACACAAGTCGACCACAAGTTCCCACCTGCAATtccaccaaccaatcagaatgcagtcTCTTTCCAAAATGCCAGTGTAACCAAAAAACGAAGAATGCGGCTAAATTTATAGAAGGATTTACATTTTGCGCTTTGCTATTAACCTTCAGTCgatgtaaaatacattttatatatatgttttaaaaatgattaaatgtttattcatgcatttataaCATTGTCATGATTGagccatttgctcatttggagTATTCATTAAAGACATGTTCGAGGTGGCACTCTCTGGTACTCTTGGCAAGCACGTTTACTTCCTAACGCTGCACATACAAGGGACGGAAAGTGCATTGTGTTCAAGCTGGAACTTTGGAGGCAGCAATAAGCCAAGATTTGCTGACCTTTAGCAGAGGACAAGGCATCAGAGAAACCAAACAAACCCTCAACATAGCCATGTGAGGCGAGAGAGGGAGTTGCGCAGAGCCTTCTTTTATGGGTTTGATATCAAGCAGTGACATGTTTGAGAAGGAATGCGAGTGTTGAAACGGCCCTCGCCGGGCTGCAAGCATACGGTTCTCGTTATTTCTCTCGTTGCATTTCCTTTTCAGGATTTGTTTGATGCTTTTGTGATTTCTGTTCAGCAGGAACAAAGTATCTCAAGGCCAAAGGAGTGCATTCAGAGCTCCATTTCTATTAGCGTGGGGGGGCGTCCGTCCTGACGAGTACAGCTTTTAACGAATACTTCAGCGAGAAATACCGACACCGCAACATCAGCTAACATCTGTCCTTATCTAGCTTTCATTCACGGTTAAATAATCTTTCAACAGTCATTTGGCAACACTTGTGTAACACAATCGCACTATCTGTTTATCtctttagtgctccaaatattcgtatctgtatctgcattcGGAtttaaagtgggcgtggcctaaaccggaagatttttttttttcttggaattaaatatgaatcctACAACTTTGCTTCCAGCAACAATGAAAAGTTCAGAAAGTCTGGAAAAATAGAGATTGTGTATGTTTCTGTCTCATGCACTATGTAGTAGCCTGATTTATCATGTATCTGTgtgcttcatatctgaccattAGCTTGTGTCTATgtgcttcatatctgactgtttGATTGTGTCTATgtgcttcatatctgactgtttGATTGTGTCTATgtgcttcatatctgaccattAGCTTGTATGTACgtgcttcatatctgacctggAGCTTGTAACTACGTCCTTCATATCTGACCATTAGCTTGTGTCTACgtgcttcatatctgaccattAGCTTGTGTCTACGTGCTTCATACCTGACCTGGAGCTTGTATCTACGCGCTTCATAACTGACCTGGAGCTTGTATCTACgcgcttcatatctgactgttcacttgtgtCTACATGCTTCACATCTCAGTTTGCCTGTATCTATGTTCTTCATATCTGACCATTAGCTTGTGACTATgtgcttcatatctgactgtttGATTGTATCTAtatgcttcatatctgaccgtTTGATTGTGTCTATGTGCTTCTTATTTGACCGATAGATTGTGCCTTCCTAGATTTATGACATTGTTATgtataatattcatattcaacCTTCCCAACAGTGCAATTCTTTACACCTAATTGATCTAAATAGTCACTTTCTATCTACTTTTCATTTGAGAGGAGGCTTCCTAAGTAGTGGCCATTGTCTGAGCTCCACAGACACTCAAAGATACATACTATCACGATACAGTCAAAAATCAGTGATAACATGAAGCTTAAACTGAATAGGAACACATTCCTACTTGTAGTTTTGCTCACGTCCAAAGAACATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255291 True 9175 lncRNA 0.42 2 22788216 22797514

Neighbor

gene id symbol gene type direction distance location
faf2 faf2,LOC107594931 coding downstream 24345 22755981 ~ 22763871 (-)
cdhr2 NA coding downstream 58363 22706554 ~ 22729853 (-)
LOC113546904 LOC108258503 coding downstream 91393 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 111468 22661560 ~ 22676748 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 143953 22629881 ~ 22644263 (-)
unc5a unc5a,LOC107677380 coding upstream 29430 22826944 ~ 23035173 (-)
dok3 dok3 coding upstream 488194 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 500435 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 532255 23329769 ~ 23338185 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding upstream 594591 23392105 ~ 23428221 (-)
G215494 NA non-coding downstream 33109 22754560 ~ 22755107 (-)
G215509 NA non-coding downstream 50737 22737276 ~ 22737479 (-)
G215507 NA non-coding downstream 54121 22733729 ~ 22734095 (-)
G215269 NA non-coding downstream 280353 22475021 ~ 22507863 (-)
G215491 NA non-coding upstream 25206 22822720 ~ 22826241 (-)
G215568 NA non-coding upstream 164426 22961940 ~ 22962156 (-)
G215589 NA non-coding upstream 201707 22999221 ~ 22999466 (-)
G215594 NA non-coding upstream 209080 23006594 ~ 23006797 (-)
G215596 NA non-coding upstream 211557 23009071 ~ 23009310 (-)
cltb cltb,LOC107750349,LOC107677378 other downstream 9148 22769637 ~ 22779068 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 83733 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 368306 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 423951 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 466483 22321174 ~ 22321733 (-)
G215624 LOC108277208 other upstream 337405 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 515372 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 558639 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1743258 24540772 ~ 24588450 (-)
grin2aa grin2a,LOC107690256,LOC107685916,LOC107568390 other upstream 1883723 24681237 ~ 24804340 (-)

Expression


Co-expression Network