faf2 (faf2,LOC107594931)


Basic Information

Item Value
gene id faf2
gene name faf2,LOC107594931
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22755981 ~ 22763871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310258.1
GTTTGACGTGTCAGCGGACGTCGCCTTGGCTTAAACGTCATCACGTTGTGTTCGAAGGGGATTGGCGAGGTAAGATGGCGGCGCCAGAGGAGCAGGAATTATCTCAGGCTCAAACTGAGAAACTCCTCCAGTTTCAGGACCTGACGGGACTGGAGTCAATGGACCAATGCCGGCGCACATTAGAACAGCACAACTGGAACATCGAGgcTGCAGTACAAGACAGACTAAATGAACAGGAAGGAGTTCCGAGTGTGTTTAACCCGCCACCCGCCAGACCCTTACAGGTCAACACAGGAGACCACAGAGTGTATAGCTATATTGTCTCAAGGCCTCAGCCTAGAggtTTATTAGGTTGGAGTTACTATTTGATAATGCTCCCGTTCAGgtttacatattacacacttaTGGACATATTCAGGTTTGCCCTGAGATTTATTAGGCCAGATCCACGGGGTCGCGTCACGGATCCCGTCGGAGACGTCGTGTCCTTTATACATAGTTTTGAGGAGAAATACGGACGATCGCATCCTGTTTTCTACCAGGGAACATATAGTCAGGCTCTGAACGATGCCAAACGGGAACTCCGCTACTTGTTAGTTTACCTTCATGGTGAAGACCACCAGGACACTGATGAATTCTGCAGAAACACATTATGTATTGAAGAGGTACTGACTTTCATCAACACGCGGATGCTGTTCTGGGCGTGCTCCACTAGCAGGCCTGAAGGATACAGAGTGTCTCAGGCTTTGCGGGAGAACACGTATCCCTTCCTGGCCATGATCATGCTGAAGGACCGCAAGATGACTGTGGTGGGCAGGCTGGAGGGTCTGATCCAGCCCGAGGATCTCATCAACCAGCTCAACTTCATCATGGAGGCCAATCAGACTTACCTGACATCCGAAAGGCTCGAAAGGGaagagaggaaccagacacagGTGCTGCGGCAGCAGCAGGACGAGGCGTACCTGGCGTCTCTGCGCGCCGATCAGGAGAAGGAACGCAAAAAAAAGGAGGAGCAGGAGCAAAGGCGGCAGGAGGAAGAGGCGGCACGGCAGACCCGCCTAGCCGAGGAGAGGAGGCAGAGGACACTCGCTGAAGAAAAAGAGCGCAAGTCCGAGTGTCTTCCCCCCGAGCCTCCACAGGACGACCCAGACTGCCTGGAAATCATGTTCAAGCTGCCCAATGACACGCGCGTAAAGCGCCGCTTCCTCTTTTCCCAGTCTCTGACGGTAATCCACGACTTCCTGTTTTCCTTGAAAGAGACGCCGGAGAAATTCCAGATCGTGACGAGCTTCCCGCGCCGCGTGCTGCCGTGTTTGCCTACGGAGGAGCAGCCGAACCCCCCGACGCTAAAGGAGGCCGGCCTGAGCCGCTCCGAGGTGCTGTTCGTGCAGGACCTCACAGACGATTGACATTCAGCCCAAAAACCCCGCTTCCTCACACACGATTGCACTCGGCCCTTTTCTGTTCGGCTCTGTGAAACGGCCGCTGTGTGCAAGGGATCGCTGAATCTCCCATTGATTAAATTAAGGATCTGCCCCATCCTCCTGACAGGTAACGTTTCATGTAAGTGGAAGGTGAACAGCCTTGTAAATACGACCTAGATATTTAAAGACGAGTGTGAATATAGCCcaattgttttggttttttttttttttttttttttttttaaagcaaatcaaAGTTGACCAGCTAACATACAATGACCATTACAAGGGTTGATGAAAGTTTGTGACTCATAACATTAAATTCACCTGGAGGGGCGGAGCCACAGCTTTTCTCTGTGGCTGTGTATGTTATAGTAGTAAAGTCTGCCCATAGTGTGCCTGTGGTCATTCATAAACGCCTCCCGTCTTTCATCTGAACGGGCTGCTCATGTAAAGATGTAATTTTCCTAttctaaattaaacattttaaaaccgt

Function

symbol description
faf2 Orthologous to human FAF2 (Fas associated factor family member 2).

NR:

description
PREDICTED: FAS-associated factor 2

GO: NA

KEGG:

id description
K18726 FAF2, UBXD8; FAS-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310258.1 True 1923 mRNA 0.50 11 22755981 22763871

Neighbor

gene id symbol gene type direction distance location
cdhr2 NA coding downstream 26128 22706554 ~ 22729853 (-)
LOC113546904 LOC108258503 coding downstream 59158 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 79233 22661560 ~ 22676748 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 111718 22629881 ~ 22644263 (-)
topaz1 topaz1 coding downstream 173879 22552724 ~ 22582102 (-)
unc5a unc5a,LOC107677380 coding upstream 63073 22826944 ~ 23035173 (-)
dok3 dok3 coding upstream 521837 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 534078 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 565898 23329769 ~ 23338185 (-)
nfkb1 nfkb1,LOC106611703,LOC106604768 coding upstream 628234 23392105 ~ 23428221 (-)
G215494 NA non-coding downstream 874 22754560 ~ 22755107 (-)
G215509 NA non-coding downstream 18502 22737276 ~ 22737479 (-)
G215507 NA non-coding downstream 21886 22733729 ~ 22734095 (-)
G215262 NA non-coding downstream 212001 22446122 ~ 22543980 (-)
G215269 NA non-coding downstream 248118 22475021 ~ 22507863 (-)
G215489 NA non-coding upstream 17452 22781323 ~ 22815252 (-)
G215493 NA non-coding upstream 24345 22788216 ~ 22797514 (-)
G215491 NA non-coding upstream 58849 22822720 ~ 22826241 (-)
G215568 NA non-coding upstream 198069 22961940 ~ 22962156 (-)
G215589 NA non-coding upstream 235350 22999221 ~ 22999466 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 51498 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 336071 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 391716 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 434248 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 435706 22319544 ~ 22320275 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 5766 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 371048 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 549015 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 592282 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1776901 24540772 ~ 24588450 (-)

Expression


Co-expression Network