G3916


Basic Information

Item Value
gene id G3916
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 7116518 ~ 7116723 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU4634
CGCAGGGAGATATTCAGACTGATGAGTTGCCTTTTGTGCACAAAACAAGACTGGTTTTGGCCAAAGGACTAGACTGACTAAAGGTTGGTCAGTATAAAGCTAACTAGAACTGTTCTGCTTATAGATGtgggagatgtgtgtgtgtgtgtgtgtgcgtgtgttataATTTTGACTCATTCCATGCATCATCTTCTGCTTCctcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4634 True 206 lncRNA 0.42 1 7116518 7116723

Neighbor

gene id symbol gene type direction distance location
vopp1 vopp1,LOC107728740,LOC107655681 coding downstream 88125 6982165 ~ 7028393 (-)
scospondin sspo coding downstream 629908 6393785 ~ 6486610 (-)
scn5lab scn12ab,LOC100305061,LOC108436082,LOC105894747 coding downstream 1154133 5846570 ~ 5962385 (-)
LOC113526783 c1h9orf152 coding downstream 1480085 5632962 ~ 5636433 (-)
nub1 LOC108271334 coding downstream 1484858 5622497 ~ 5631660 (-)
napga napg,LOC108271818,LOC108431250,LOC107734322,LOC105890170,LOC107655688 coding upstream 641661 7758384 ~ 7766765 (-)
si:dkey-192l18.9 LOC108271824,LOC108431261,LOC103043891,LOC107565690 coding upstream 653936 7770659 ~ 7803866 (-)
zgc:111976 LOC108260677 coding upstream 693632 7810355 ~ 7822642 (-)
itgb1a itgb1,itgb1a,LOC107653806,LOC107565694,LOC107566918 coding upstream 738246 7854969 ~ 7897912 (-)
LOC113526829 LOC108271509 coding upstream 827322 7944045 ~ 7952913 (-)
G3884 NA non-coding downstream 134789 6981136 ~ 6981729 (-)
G3857 NA non-coding downstream 174676 6941446 ~ 6941842 (-)
G3834 NA non-coding downstream 200951 6910062 ~ 6915567 (-)
G3837 NA non-coding downstream 212617 6903425 ~ 6903901 (-)
G3838 NA non-coding downstream 218751 6896842 ~ 6897767 (-)
G3926 NA non-coding upstream 171472 7288195 ~ 7288436 (-)
G3979 LOC107747660 non-coding upstream 276399 7393122 ~ 7393386 (-)
LOC117598440 LOC107734324,LOC107655679 non-coding upstream 400066 7516789 ~ 7528237 (-)
trnae-cuc_2 NA non-coding upstream 441026 7557749 ~ 7557820 (-)
G4100 NA non-coding upstream 490732 7607455 ~ 7608192 (-)
kcnh2b kcnh2,kcnh2b,LOC103370207,LOC107753075,LOC107713341,LOC107667232,LOC107686960 other downstream 725129 6184134 ~ 6391389 (-)
LOC113526501 LOC100001114,LOC107686888,LOC107753050,LOC108271494,LOC107560367,LOC102294047 other downstream 939491 6099264 ~ 6177027 (-)
G3420 NA other downstream 1030862 6069359 ~ 6085656 (-)
LOC113526375 NA other downstream 2129808 4979656 ~ 4986710 (-)
G2709 NA other downstream 2211311 4900886 ~ 4905207 (-)
fxyd6l LOC108272023 other upstream 789072 7905795 ~ 7921928 (-)
LOC113526670 NA other upstream 1183919 8300642 ~ 8302301 (-)
G4658 LOC108265278 other upstream 1207859 8324582 ~ 8367964 (-)
si:ch211-285f17.1 kiaa1217 other upstream 1860024 8976747 ~ 9093317 (-)
G4948 NA other upstream 1901684 9018407 ~ 9112988 (-)

Expression


Co-expression Network