snap29 (snap29)


Basic Information

Item Value
gene id snap29
gene name snap29
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17877415 ~ 17889450 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925743.2
TCCCGAATAGCAGTTCCGGGTTGAGGGGAGAATGTAGCGGTAGTTGCTTCGAACACGCCTTTTGACGTCAACGCCGAGACAGGAAGTGTTGTGGACACTCTGGCAGCACTGAAACCATTACCTTCAGCGATAAGGGGCTTCGATATCATCCAAACCTTGCCTTGAGGGTGGCAATGTATTCAAACGTCCACAACCCATTTGCACATGATGATGAAGAGCATGCCTCACCAGCAAGAAGAGGCTTTAATTtcgatgatggtgatgaagaaGAAAGCACAATGAATCCAGCAGATCGACGTCAGAGGCAGCTCGAACAAGAGGTGATGTGCACCGCTCAGTCTGCCATGGACAGCAGCAGTCGCTCCCTCCGCCTCATCTATGAGTCAGAGAAAATCGGAACAGAGACAGCAGAGGAGTTAATTCGTCAGGGTGAGGCCTtgaagagaacagagagaatgGTTGATAATATGGCACAGGACATGAAGACTAGTCAAAAGCACATAAACTCTATTAAGAGTGTATGGGGAGGTTTGGTTAACTACTTCAAAGGAAATTCTGAGCCAAGGCCTCCACAGAAGGAACAGCCACCAGTCTATGAGGCCAACAACAGATTACAGAATGCACTGGCAGAAACCAAGGAGCATGAAGGTAAATATGAGGCCAGCCATCCCAACCTCAGGAAACTGGACACATCTGGGTTTGGTGCTTCATTTGATAATGAATCATCTCAAAATGGATACTCAAAGAACAGACACTTGAAAGCTGCTCATGAGCATCTGGACAATAACTTAGATGAGATGTCCAAGGGTCTGAGTCGACTGAAGAATTTGGGCCTGGGGTTACAAGCAGAGATTGATGATCATGATGTCTCACTGAACTCTCTGCTAACTAAAGTGGACTCTATGGAAGGCAAGATAAGCTCCACCAACCGCCAActcaaaaatctgaaataaaactaGAGACTGACATTAATTCCTGTGTCATCTCAATAGTGGTGCATTATTGGATATTATTTGACCAATAGCCAATTTAACAGTTTCACTCTTACCAATTTAATTAGCAAGTCTTAGCATAGATGCTTTCTCCCCACCATATGACAGTGGTATCAGTTtcagagggtgaaggctagtACTTGCTTTTCAGTACCTTCTGCTGTTTTCATAAGCAGTGGTATATGCCGAATAGGAATGTGAGTCCTTCTCTACACATTTAGCTAAAGagcttttatctttttattttatttttatcttttagcCAGATCACATCAGACATCTGACCTAATGTGTAGTCATTTTGTGTAAGGCTTTTCTAAGCAAGTATAGGGTctataaaatgtcttaaaatgaaAGTTGGCAAGAACATGTTGCAGTAAATGAAGAATACCTATTTTAAAccataatgataaataatatttctttcCATCATGACATTACATTTTGAGTGTGagttttaaaggaatattcGTTGTTTTTCTGTATAATCACTACCTACCAAACaagaattttgacacatttcttagtacagagaaaagaaaacctgCTTACTTGAAGCTTACTTACAATAGAAGTCTAAGGGTAGTTGTTGGGGCagttaataaatgtttgtgCAACTTGTATTTTTGCATAACgcatgaattaatttttttaagttgtGTAAAGCGAACcttcaaaaaaaatgtaaagctctATAAAAGTATAAGGTTTTCTTATCGAGATCTAAATACTTTATCAGAGTAAAGCTACGGGCTAGTTATGGGCTACCAACATAGTCAACCTAGGGTAAAGTCTGTCAGAAGAACCTCAGTTTCTGCCCAAATGCACATGGATACCACAAAACTGTGAATGCATAAATACCTAATGACAACAGATGTTAAAATGAAGTTTTATTCAACTTCCATGTGTACTTTTTGAGATACTCTGACTACATTGGTATGTCGTAACCATAACATGTTCCTGCTGAAAAAGCATTTCCAGATTATACAGAATTGGAGCCTGCTTTACAAATTCCTTTGACTGAACAATTTATAAAGTGCTGTATAAAATTCTGTTGCTCATGAATGTTTAACTGCCTAATAAATGTCCTTCCATTACTAGTTATTACTTTTAATCAAGTGAGTTTCACTTTCTCTTCTCAGTATAGGGAAACTATCAATTATTTGGCCATGATCAAGTAACTAGATAATAGGTTAGTCTGATTGTTTTATGTAGGTTTGACATGTAAAAGGGCAACATGATTTCAGTGTTTGTCTTTACATTGTAAAGCAGGCTAAATTGTTGTagattaatgtgtttatatttttaaaacctactgtgaaaaaatacattatgtaaagaaaataaaaggttAGTTACATTA
>XM_034306754.1
TGCCATATTTAATCTTGTAGCACGCATATCAGTTACCCTCCCCAGATACTAAACACTAGATACTAAACGAAAAAAATGGATACTTCAGAAGAGACACTCAACCATATATTTGGTCTGGATGGTAAAACCTCGACTACACATCCCAACTGACAAAGGATTttcaggaggagaaagaaaataaagtcaTTAAGAAAGCTAAATCCCAGAGACTGATTATAGGAGCCATTATAATGGCAGCTACAGGCTTCGATATCATCCAAACCTTGCCTTGAGGGTGGCAATGTATTCAAACGTCCACAACCCATTTGCACATGATGATGAAGAGCATGCCTCACCAGCAAGAAGAGGCTTTAATTtcgatgatggtgatgaagaaGAAAGCACAATGAATCCAGCAGATCGACGTCAGAGGCAGCTCGAACAAGAGGTGATGTGCACCGCTCAGTCTGCCATGGACAGCAGCAGTCGCTCCCTCCGCCTCATCTATGAGTCAGAGAAAATCGGAACAGAGACAGCAGAGGAGTTAATTCGTCAGGGTGAGGCCTtgaagagaacagagagaatgGTTGATAATATGGCACAGGACATGAAGACTAGTCAAAAGCACATAAACTCTATTAAGAGTGTATGGGGAGGTTTGGTTAACTACTTCAAAGGAAATTCTGAGCCAAGGCCTCCACAGAAGGAACAGCCACCAGTCTATGAGGCCAACAACAGATTACAGAATGCACTGGCAGAAACCAAGGAGCATGAAGGTAAATATGAGGCCAGCCATCCCAACCTCAGGAAACTGGACACATCTGGGTTTGGTGCTTCATTTGATAATGAATCATCTCAAAATGGATACTCAAAGAACAGACACTTGAAAGCTGCTCATGAGCATCTGGACAATAACTTAGATGAGATGTCCAAGGGTCTGAGTCGACTGAAGAATTTGGGCCTGGGGTTACAAGCAGAGATTGATGATCATGATGTCTCACTGAACTCTCTGCTAACTAAAGTGGACTCTATGGAAGGCAAGATAAGCTCCACCAACCGCCAActcaaaaatctgaaataaaactaGAGACTGACATTAATTCCTGTGTCATCTCAATAGTGGTGCATTATTGGATATTATTTGACCAATAGCCAATTTAACAGTTTCACTCTTACCAATTTAATTAGCAAGTCTTAGCATAGATGCTTTCTCCCCACCATATGACAGTGGTATCAGTTtcagagggtgaaggctagtACTTGCTTTTCAGTACCTTCTGCTGTTTTCATAAGCAGTGGTATATGCCGAATAGGAATGTGAGTCCTTCTCTACACATTTAGCTAAAGagcttttatctttttattttatttttatcttttagcCAGATCACATCAGACATCTGACCTAATGTGTAGTCATTTTGTGTAAGGCTTTTCTAAGCAAGTATAGGGTctataaaatgtcttaaaatgaaAGTTGGCAAGAACATGTTGCAGTAAATGAAGAATACCTATTTTAAAccataatgataaataatatttctttcCATCATGACATTACATTTTGAGTGTGagttttaaaggaatattcGTTGTTTTTCTGTATAATCACTACCTACCAAACaagaattttgacacatttcttagtacagagaaaagaaaacctgCTTACTTGAAGCTTACTTACAATAGAAGTCTAAGGGTAGTTGTTGGGGCagttaataaatgtttgtgCAACTTGTATTTTTGCATAACgcatgaattaatttttttaagttgtGTAAAGCGAACcttcaaaaaaaatgtaaagctctATAAAAGTATAAGGTTTTCTTATCGAGATCTAAATACTTTATCAGAGTAAAGCTACGGGCTAGTTATGGGCTACCAACATAGTCAACCTAGGGTAAAGTCTGTCAGAAGAACCTCAGTTTCTGCCCAAATGCACATGGATACCACAAAACTGTGAATGCATAAATACCTAATGACAACAGATGTTAAAATGAAGTTTTATTCAACTTCCATGTGTACTTTTTGAGATACTCTGACTACATTGGTATGTCGTAACCATAACATGTTCCTGCTGAAAAAGCATTTCCAGATTATACAGAATTGGAGCCTGCTTTACAAATTCCTTTGACTGAACAATTTATAAAGTGCTGTATAAAATTCTGTTGCTCATGAATGTTTAACTGCCTAATAAATGTCCTTCCATTACTAGTTATTACTTTTAATCAAGTGAGTTTCACTTTCTCTTCTCAGTATAGGGAAACTATCAATTATTTGGCCATGATCAAGTAACTAGATAATAGGTTAGTCTGATTGTTTTATGTAGGTTTGACATGTAAAAGGGCAACATGATTTCAGTGTTTGTCTTTACATTGTAAAGCAGGCTAAATTGTTGTagattaatgtgtttatatttttaaaacctactgtgaaaaaatacattatgtaaagaaaataaaaggttAGTTACATTA

Function

symbol description
snap29 Predicted to enable SNAP receptor activity and syntaxin binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; pronephros morphogenesis; and regulation of neuron projection development. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Used to study CEDNIK syndrome. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29).

NR:

description
synaptosomal-associated protein 29

GO:

id name namespace
GO:0048730 epidermis morphogenesis biological_process

KEGG:

id description
K08509 SNAP29; synaptosomal-associated protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925743.2 False 2355 mRNA 0.38 6 17877415 17889450
XM_034306754.1 True 2462 mRNA 0.37 6 17877415 17888690

Neighbor

gene id symbol gene type direction distance location
gle1 gle1,LOC102792584 coding downstream 501434 17354723 ~ 17375981 (-)
naif1 naif1 coding downstream 564679 17304033 ~ 17312736 (-)
serpind1 serpind1 coding downstream 633270 17241189 ~ 17244145 (-)
LOC117597826 tkt coding downstream 727644 17089556 ~ 17149771 (-)
LOC117597825 tkt coding downstream 840797 17022193 ~ 17036618 (-)
si:dkeyp-117b11.1 LOC108265828 coding upstream 57616 17947066 ~ 18007340 (-)
LOC113533608 LOC108265095,LOC108440311 coding upstream 243690 18133140 ~ 18135241 (-)
mrpl40 mrpl40,LOC107753002 coding upstream 345664 18235114 ~ 18240662 (-)
gapvd1 gapvd1,LOC108265693,LOC107550582,LOC107723237 coding upstream 434243 18323693 ~ 18395412 (-)
angptl2b angptl2,angptl2b,LOC108265238,LOC107669255,LOC107723239,LOC107550587,LOC107727328,LOC107564039 coding upstream 1429800 19319250 ~ 19333394 (-)
G134531 NA non-coding downstream 31297 17845917 ~ 17846118 (-)
G134526 NA non-coding downstream 114517 17762693 ~ 17762898 (-)
G134522 NA non-coding downstream 138168 17738926 ~ 17739247 (-)
G134520 NA non-coding downstream 139350 17737592 ~ 17738065 (-)
G134459 NA non-coding downstream 359620 17517560 ~ 17517795 (-)
G134547 NA non-coding upstream 3802 17893252 ~ 17893501 (-)
G134556 NA non-coding upstream 11510 17900960 ~ 17901169 (-)
G134577 NA non-coding upstream 27944 17917394 ~ 17917620 (-)
LOC113533575 NA non-coding upstream 32384 17921834 ~ 17929284 (-)
G134633 vdac3,LOC107722858,LOC107560056 non-coding upstream 157739 18047189 ~ 18063821 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 1778168 16085069 ~ 16099247 (-)
ccl27a NA other downstream 1924736 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 2697219 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 2814193 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 3057687 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 159298 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 364135 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 1806948 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 2084114 19973564 ~ 20005390 (-)
G135737 NA other upstream 2150847 20040297 ~ 20040688 (-)

Expression


Co-expression Network